PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37159.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 721aa    MW: 78457.9 Da    PI: 5.0542
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37159.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.39.9e-12721072156
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  KZV37159.1  72 ECPHPDDKQRKELGRRLTLEPLQVKFWFQNKRTQMK 107
                 589******************************998 PP
2START222.11.7e-692404611206
                 HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 ela +a++elv++a+ +ep+W +s      +++ +de++++f+++ +      ++ea+r+s vv+m++++lve+l+d++ qW+  +     +a+t+ev+
  KZV37159.1 240 ELAVAAMEELVRMAQTGEPLWIRSIetssvQILCEDEYVRTFPRGIGpkplgMKSEASRDSSVVIMNHVNLVEILMDVN-QWSSVFSsivsRAMTVEVL 337
                 57899********************99999**************999********************************.******************* PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtw+ehv++++ ++
  KZV37159.1 338 STGvagnynGALQVMTAEFQVPSPLVPtREIYFVRYCKQHAEGIWAVVDVSLDNLRPTS----LSRCRRRPSGCLIQELPNGYSKVTWIEHVEVDDGSV 432
                 ********************************************************976....7*********************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+++++lv+sg+a+ga++wvatl+rqce+
  KZV37159.1 433 HSIYKPLVESGMAFGARRWVATLDRQCER 461
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002166113IPR001356Homeobox domain
CDDcd000869.87E-972110No hitNo description
PfamPF000462.5E-972107IPR001356Homeobox domain
SuperFamilySSF466891.67E-972112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1172116IPR009057Homeodomain-like
PROSITE profilePS5007111.82374109IPR001356Homeobox domain
SuperFamilySSF559611.53E-38231463No hitNo description
PROSITE profilePS5084846.779231464IPR002913START domain
CDDcd088757.23E-130235460No hitNo description
SMARTSM002341.2E-70240461IPR002913START domain
PfamPF018522.4E-58241461IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-4331460IPR023393START-like domain
SuperFamilySSF559613.44E-26481714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MFDGHQLLLD MEHKTPENQM DLIGGDDQYE AKSGTNIMEA PGSIDDQDPN RKTQEEAIPS  60
PHTASNPRNG IECPHPDDKQ RKELGRRLTL EPLQVKFWFQ NKRTQMKAQH ERNENTTLKT  120
ENDKLRAENL QYKEALSNAT CPNCGGPSSF GETSFDEQQL RIENSRLREE IDRIFGIAAK  180
YVGKPMLSSP HLPEGASRSL DLGAGNFVPQ TSIAGEVYGA TDLLRSISGP TEADKPMIIE  240
LAVAAMEELV RMAQTGEPLW IRSIETSSVQ ILCEDEYVRT FPRGIGPKPL GMKSEASRDS  300
SVVIMNHVNL VEILMDVNQW SSVFSSIVSR AMTVEVLSTG VAGNYNGALQ VMTAEFQVPS  360
PLVPTREIYF VRYCKQHAEG IWAVVDVSLD NLRPTSLSRC RRRPSGCLIQ ELPNGYSKVT  420
WIEHVEVDDG SVHSIYKPLV ESGMAFGARR WVATLDRQCE RLASSMANNI AAGDIGVISS  480
PGGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSGSGADD VRVLTRKSMD EPGRPPGIVL  540
SAATSFWLPV PPKRVFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG NSVSLLRVNS  600
ANTSQSNMLI LQESCTDSAG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS GFAILPDGPN  660
NHQAGGVLEI GSGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIKCTIE RIKDAVLGDT  720
A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2Z7BRT20.0A0A2Z7BRT2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]