PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV35039.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Dof

Protein Properties

Length: 356aa MW: 37894.4 Da PI: 9.5129

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV35039.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	77	136	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+ KZV35039.1 77 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGWRRNKRSK 136 7789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-33	60	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MVFSSIPAYL DPSNWQQQQT SQQIIGSSSG ANPPLIPQPP VTPPPPPLQP HGGGGAGSIR 60 PGSMSERARI ANIPMPETAL KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL 120 RNVPVGGGWR RNKRSKSNSS KSPASGDRQP TGCSTSNIST ISGGQSNILG LTPQILPPLR 180 FMSPMSQFTD NFNNEMALNY SGISSPMIST ASDHQMNFPM GVSSFLGGGG VASLFPGSGN 240 EPWRLQQVQQ FPFLGGGLDP SPSGMYQFQG GDSGLVGGET THIDQLRPKI SSSSLITQAS 300 TSMKMEGNTE MNLSRQLLGE TIQGNNGNWS SPAAAPPAAA WTDLSTFSSS STNTPL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MVFSSIPAYL DPSNWQQQQT SQQIIGSSSG ANPPLIPQPP VTPPPPPLQP HGGGGAGSIR  60
PGSMSERARI ANIPMPETAL KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL  120
RNVPVGGGWR RNKRSKSNSS KSPASGDRQP TGCSTSNIST ISGGQSNILG LTPQILPPLR  180
FMSPMSQFTD NFNNEMALNY SGISSPMIST ASDHQMNFPM GVSSFLGGGG VASLFPGSGN  240
EPWRLQQVQQ FPFLGGGLDP SPSGMYQFQG GDSGLVGGET THIDQLRPKI SSSSLITQAS  300
TSMKMEGNTE MNLSRQLLGE TIQGNNGNWS SPAAAPPAAA WTDLSTFSSS STNTPL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV35039.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549341.1	1e-124	LOW QUALITY PROTEIN: dof zinc finger protein DOF5.1-like
Swissprot	O80928	3e-56	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	A0A2Z7BKL5	0.0	A0A2Z7BKL5_9LAMI; Uncharacterized protein
STRING	EOY07547	1e-101	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-48	DNA binding with one finger 2.4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]