PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV34879.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HSF

Protein Properties

Length: 468aa MW: 52546.2 Da PI: 4.8546

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV34879.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.6	2.3e-34	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d++++ ++sws++ +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k++l++i+ KZV34879.1 16 FLLKTYEMVDDSSTDAIVSWSASRKSFVVWNPPEFARLLLPSYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHNLKNIH 103 9******************999*************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k KZV34879.1 104 RRK 106 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	8.98E-35	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.9E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.0E-59	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.6E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.6E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.6E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MDGGGGGGGG GGPAPFLLKT YEMVDDSSTD AIVSWSASRK SFVVWNPPEF ARLLLPSYFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANED FVKDQKHNLK NIHRRKPIHS HSQPQGSVDP 120 ERAAFEEEID RLSRENAVLK GNILAYEEQQ SAATVPLENL TQRIVDMEQR QERLLSFLDK 180 AVQKPEFVEL LAQKLESLDF SAYNKKRRLP EVDHSQSVQE NILVDNQNSC RPELGNICPQ 240 DFCDKLRLEL SPTVSDINLL SRSTQSSNDD GVSPLGRMDG WPRDEHARTA GFPCPSETLE 300 LSDTGASFTL RMDSPLPCHV GLESPKLHSL QHNLASNKDD DCHISCLLHL SLTSSSLEPN 360 NSQNLAPMPE PRPNTDENDR LPTQGTSFDD AHVPSSSEDI HSKKQEPTTA QTRVNDVFWE 420 QFLTEKPGCS DTEEASSGYR PNAYIEKEEK NLTKGVTINT EGMEHLTL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MDGGGGGGGG GGPAPFLLKT YEMVDDSSTD AIVSWSASRK SFVVWNPPEF ARLLLPSYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FVKDQKHNLK NIHRRKPIHS HSQPQGSVDP  120
ERAAFEEEID RLSRENAVLK GNILAYEEQQ SAATVPLENL TQRIVDMEQR QERLLSFLDK  180
AVQKPEFVEL LAQKLESLDF SAYNKKRRLP EVDHSQSVQE NILVDNQNSC RPELGNICPQ  240
DFCDKLRLEL SPTVSDINLL SRSTQSSNDD GVSPLGRMDG WPRDEHARTA GFPCPSETLE  300
LSDTGASFTL RMDSPLPCHV GLESPKLHSL QHNLASNKDD DCHISCLLHL SLTSSSLEPN  360
NSQNLAPMPE PRPNTDENDR LPTQGTSFDD AHVPSSSEDI HSKKQEPTTA QTRVNDVFWE  420
QFLTEKPGCS DTEEASSGYR PNAYIEKEEK NLTKGVTINT EGMEHLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-21	7	105	17	129	Heat shock factor protein 1
5d5v_B	5e-21	7	105	17	129	Heat shock factor protein 1
5d5v_D	5e-21	7	105	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV34879.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073785.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-141	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2G9GT27	0.0	A0A2G9GT27_9LAMI; Heat shock transcription factor
TrEMBL	A0A4D8YKV4	0.0	A0A4D8YKV4_SALSN; Heat shock transcription factor, other eukaryote
STRING	POPTR_0001s32810.1	0.0	(Populus trichocarpa)
STRING	PGSC0003DMT400011871	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-139	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]