PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34147.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 380aa    MW: 43584 Da    PI: 5.2564
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34147.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.37.4e-26421292103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+ ++d+++++++sws+ +nsf+v+++++fa ++Lp+yFkh+nf+SF+R     gF+kv+ ++         weF++k F +g+++ l++i 
    KZV34147.1  42 FLSKTYDFVDDPSTDDVVSWSRGNNSFIVWNPQSFAANLLPQYFKHNNFSSFLR-----GFSKVDPDK---------WEFANKGFLRGQRHILKNII 124
                   9*****************************************************.....9*****999.........*******************9 PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    KZV34147.1 125 RRKTQ 129
                   99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-2837121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-4538126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-2538126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-114265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-2142126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-118092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNYSIDFVKE EYVGSTSSQD WDNEEVIPRP LEALLETAPP PFLSKTYDFV DDPSTDDVVS  60
WSRGNNSFIV WNPQSFAANL LPQYFKHNNF SSFLRGFSKV DPDKWEFANK GFLRGQRHIL  120
KNIIRRKTQH PSSQTLRKNL DSCVEVENFG LDAGIDRLRP NKQILMKEFV ELKQKQERTL  180
SCLKTMEQRL KRAEMKQNQA ANFIAKAVQN PNLLQQMLRP EHQKLELEEV KDNKRRRRIL  240
DATNVGLGEL VVCEGETHNL FTVGKFGFPE LGQGSVGNAH KNDVGNIGQF GYGNFVKLER  300
EEYGELPRFG DLELEKLALS MQKPKLIVEE KSSDKGSCKP VDGGFRDEML TEEIGDIGTF  360
WDEDGENGLA EHNWDSWFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-174012818122Heat shock factor protein 1
5d5u_B1e-174012827131Heat shock factor protein 1
5d5v_B1e-174012827131Heat shock factor protein 1
5d5v_D1e-174012827131Heat shock factor protein 1
5hdg_A8e-18401288112Heat shock factor protein 1
5hdn_A8e-18401288112Heat shock factor protein 1
5hdn_B8e-18401288112Heat shock factor protein 1
5hdn_C8e-18401288112Heat shock factor protein 1
5hdn_D8e-18401288112Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.11e-102heat stress transcription factor A-2c
TrEMBLA0A2Z7BJA40.0A0A2Z7BJA4_9LAMI; Heat stress transcription factor A-6b
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-67heat shock transcription factor A6B