PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32529.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42609.6 Da    PI: 10.2403
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32529.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-221663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk++ +
  KZV32529.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKVFSF 63
                58888899*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-34766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-27784IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.936767IPR002100Transcription factor, MADS-box
CDDcd002652.27E-34879No hitNo description
PRINTSPR004043.7E-18929IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAKKPSMGRQ KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKV  60
FSFGHPNVEL IVERFLNLNP SATTSNPFHL MEAQRNVTVC ELNMQLGQIL NELEMERKRG  120
EALDQMRKSN QSHYWWEGPI DKLGLHELEQ LQDAIQELKK NVGGQVAKVM SQVATSAILL  180
GPDGGGEDGV FYQYEIKPGK KIDLAEVRAL QNGAGRRPVK APWVRPPRRR VGPDSRDAPR  240
RMGSPRSTDR RSSPQPRQRP VADGKSTIDR RKELGPKSDD VPRQSGEDGA QKNLKRSREV  300
ENGAPHNVSG GGHLFMEGVN RRDRANSFWD MSDPDLGWSM GKTLIGDHDV LHLLSRPTES  360
LTHALAWNAC QVCYSVVVMT QS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234717.12e-93PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2Z7BGG50.0A0A2Z7BGG5_9LAMI; Uncharacterized protein
STRINGXP_009761267.12e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-50AGAMOUS-like 62