PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26019.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 519aa    MW: 57794.4 Da    PI: 7.287
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26019.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2955138186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW++qe+laL+++r++m++ +r+++lk+plW+evs+km e gf+rs+k+Ckek+en+ k++k++k+g+ ++ +   +++++fdql 
  KZV26019.1  55 RWPRQETLALLKIRSDMDSLFRDSNLKGPLWDEVSRKMGELGFQRSAKKCKEKFENVFKYHKRTKDGRASKPE--GKSYRFFDQLA 138
                 8********************************************************************9744..446******96 PP
2trihelix105.15.1e-33367451186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k e+ aLi++r++++ +++++ +k+plWeevs++m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+
  KZV26019.1 367 RWPKAETEALIQLRTNLDLKYQDSGAKGPLWEEVSAAMAKIGYHRSSKRCKEKWENINKYFKKVKESNKKR-PDDSKTCPYFQQLD 451
                 8*********************************************************************8.99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01352114IPR001005SANT/Myb domain
PROSITE profilePS500906.79554112IPR017877Myb-like domain
CDDcd122032.07E-2654119No hitNo description
PfamPF138371.4E-1954139No hitNo description
SMARTSM007173.0E-4364426IPR001005SANT/Myb domain
PfamPF138375.3E-24366452No hitNo description
Gene3DG3DSA:1.10.10.602.5E-4366423IPR009057Homeodomain-like
CDDcd122031.59E-26367431No hitNo description
PROSITE profilePS500907.457367424IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLGGGGGGGG SAGEESGGGD VGASTSVYPS GGAVGEVDES IRMEETERGG GGGNRWPRQE  60
TLALLKIRSD MDSLFRDSNL KGPLWDEVSR KMGELGFQRS AKKCKEKFEN VFKYHKRTKD  120
GRASKPEGKS YRFFDQLAAL ETTPPPPTAA SVQPMAVSTV TSTLPGGRMP QITPHSSIYQ  180
LQVPQIPPFD CPTSSATPTS DSTSSDDSIQ ERRRVRKRKR KWKDFFGRLM ADVIQRQQEL  240
QRQFLETLDK RETDRAAREE ARRNHEIDRI SREHDLLVQE RSAAAAKDAA LIGFLQKITE  300
HNLQIPSSND TLQVQQLLQT ILPPPPPPPP AMVSPSQPSN TGDAAAKTDN SGDDKDITNH  360
LSSSSTRWPK AETEALIQLR TNLDLKYQDS GAKGPLWEEV SAAMAKIGYH RSSKRCKEKW  420
ENINKYFKKV KESNKKRPDD SKTCPYFQQL DVIYRERAKH DSERPVVPIM AMPEQQWPLP  480
EKTHDQENDN SSENIDESDD GGGSYEMITN KINNPSNAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212218RRVRKRK
2212220RRVRKRKRK
3215220RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101538.11e-165trihelix transcription factor GT-2-like
TrEMBLA0A2Z7B2Z70.0A0A2Z7B2Z7_9LAMI; Trihelix transcription factor GT-2-like
STRINGSolyc12g056510.1.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-112Trihelix family protein