PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV25786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | B3 | ||||||||
Protein Properties | Length: 846aa MW: 94449.5 Da PI: 6.3765 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59 | 8.7e-19 | 331 | 430 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g+ W++++++ +++s++yvl+ G + ++++gD+v+F++++ +++lv++ KZV25786.1 331 FEKILSASDAGRIGRLVLPKACAEAYfpPINQSEGIPIRIQDIKGKHWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDIVTFSRID-PGGQLVIG 427 99**************************777788999***************9989999999***9.********************887.88888888 PP EE- CS B3 96 vfr 98 ++ KZV25786.1 428 CRK 430 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-27 | 326 | 432 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-19 | 328 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.62E-23 | 329 | 430 | No hit | No description |
PROSITE profile | PS50863 | 10.419 | 331 | 432 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 331 | 431 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-16 | 331 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.037 | 553 | 603 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.5E-9 | 560 | 600 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MGSKNCMNEA CRTTTSSEWK KGWSLKSGGF ATLCYNCGSA YENSVFCETF HFKESGWREC 60 RLCGKLIHCG CTTSRYLYEY MDFGGISCLS CAKHLEIQPV QPVQDDYMVL ILEWFMQTPG 120 DLSHGAFMTN GVNDVYPLVT EHKRNDDKFS TDRLLRLTKA VGANDVISKL EQVRREESML 180 RTVDTQSCVS NLRQQCSSSA FLKPDIDRPK KEVKDTFESL TQQSQFSLAT PLGSSTSVLP 240 FRGEITEGIE QNKSSFQLGK NTKQSLSKPI KHSTAAGSET HKGNIAQKRF ARPPADGRGR 300 TQLLPRYWPK ITDQELQQLS GDLKSSIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPPI 360 NQSEGIPIRI QDIKGKHWTF QFRFWPNNNS RMYVLEGVTP CIQNMQVQAG DIVTFSRIDP 420 GGQLVIGCRK ATNNGDVLDS HANLLPNGNS PGETSYSGVT ETFLPTGGRT SDESMQQSNP 480 VSEKKLRNIK NKRLLMHNDD AMELRITWEE AQELLRPSTS SKPTIVLIED LEFEEFDEPP 540 IFGKRTFFTS RLSGEEEQLA QCDICSKWRR LPVHALLSAK WTCSDNIWDS NRCSCSAADD 600 ISPQDLEALF ASNNEFKKRR ISDNVSKEGE PSGLDALATI AVLGDNIGDI GESSAGATTR 660 HPRHRPGCTC IVCIQPPSGK GKHEPTCKCN VCSTVKRRFK TLMMRKKKRQ SEREAELSQE 720 KDKPALAKNS SEKEEEEEDI AGNDLLNMNH HQENEDGNQM RLEEAKKGRL DLNCDPYREE 780 DVIAEEDGMS LTTLMNAATL PFDMFLGKPN GLPSLEAPVM KKEHNADSEG AMLPRVAGQE 840 NNPDNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-69 | 309 | 437 | 2 | 130 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 695 | 706 | KRRFKTLMMRKK |
2 | 695 | 708 | KRRFKTLMMRKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV25786.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080654.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A2Z7AWL4 | 0.0 | A0A2Z7AWL4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00818.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |