PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18523.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 674aa    MW: 76285.7 Da    PI: 5.8494
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18523.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.1e-363584492102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+ g+sfvv+d+++f+++vL++yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++i+
    KZV18523.1 358 FLTKTYDMVDDPNTNHIVSWSRGGHSFVVWDPHSFSTNVLSNYFKHNNFSSFVRQLNTYGFRKTDPDR---------WEFTNEAFLEGQKHLLRNIR 445
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KZV18523.1 446 RRKA 449
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5174639.9591289IPR001932PPM-type phosphatase domain
SMARTSM003322.6E-474287IPR001932PPM-type phosphatase domain
CDDcd001434.80E-595289No hitNo description
PfamPF004812.9E-4612281IPR001932PPM-type phosphatase domain
SuperFamilySSF816067.98E-531552IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.101.8E-6316289IPR001932PPM-type phosphatase domain
PROSITE patternPS0103201826IPR000222PPM-type phosphatase, divalent cation binding
SuperFamilySSF816067.98E-5380289IPR001932PPM-type phosphatase domain
SMARTSM004159.5E-59354447IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-38354447IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.47E-34354447IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-17358381IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-32358447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-17396408IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-17409421IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043169Molecular Functioncation binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MKLPFSSKDV LEDVSIGVAA IFDGHGGKEA SELASRKILD YLFLHVVFIE YGRLRLISKN  60
NSGSHTLRQE GTSPGSETRH KILEEALLRT IQDIELEFNQ EASEKGYVSG CTAIIVLLVD  120
GQFFIANIGD SKALLCSGQN QTPYHTGSTL VKNLVVEELT RDHHPDREDE KARITAAGGI  180
VSWWGVPRVN GILAISRAIG DVQFKRYGVI ADPEVVGWRC FKPENRYLVL ASDGVFEVFT  240
PQNVCDLLHG KTPESSSEFV ATTSLADRIS RKAFKAGSTD NLSVIVISIL NNTLNYRQIG  300
SSSIRPTSLN YSFRVKEEYP SWQQPIADTP PAQPTEYGAA VGHPRPIEGL HEMGPPPFLT  360
KTYDMVDDPN TNHIVSWSRG GHSFVVWDPH SFSTNVLSNY FKHNNFSSFV RQLNTYGFRK  420
TDPDRWEFTN EAFLEGQKHL LRNIRRRKAP AQSVPPQQDN AEPCVEVGRF GVDGEIDRLT  480
RDKHVLMMEL VKLRQQQQTT RAYLQQMELR LQGTERKQQQ MMSFLARAMQ NPEFIHQLVQ  540
HKEKRKQLED AVSKKRRRPI EYGESSRTNK GKTPIKAEPL DLGDSDGYFQ VSELEALALE  600
MQGFGKPKRE HEDADERELT ELGSYDKELD DGFWEELLNE RFDQEQGTSK KEEEEEEDVN  660
CLADRLGILG SSPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nmv_B4e-302028963312Protein phosphatase 2C 77
3ujk_A4e-302028963312Protein phosphatase 2C 77
3ujl_B4e-302028963312Protein phosphatase 2C 77
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1543557KRKQLEDAVSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079918.11e-170heat stress transcription factor A-7a
SwissprotQ9LUH81e-115HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2Z7AA320.0A0A2Z7AA32_9LAMI; DNA binding protein isoform 1
STRINGEOX946441e-159(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B