PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ42333.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB_related
Protein Properties Length: 278aa    MW: 28603.7 Da    PI: 10.5277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ42333.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-1486130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++Iar +   Rt+ q+ s+ qky
       KXZ42333.1  86 PWTEEEHRLFLLGLAKFGKGDWRSIARNFVVSRTPTQVASHAQKY 130
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.97E-71167IPR009057Homeodomain-like
SMARTSM007170.00191768IPR001005SANT/Myb domain
CDDcd001672.20E-62165No hitNo description
PROSITE profilePS500905.1922166IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-42368IPR009057Homeodomain-like
PROSITE profilePS5129419.02679135IPR017930Myb domain
SuperFamilySSF466891.31E-1681136IPR009057Homeodomain-like
SMARTSM007172.0E-1283133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1283129IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1783133IPR006447Myb domain, plants
PfamPF002495.1E-1286130IPR001005SANT/Myb domain
CDDcd001676.60E-1186131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSASFSISGD YVQPTGVATF WRLEENKVFE VALAKHYLDA DRYERIAAYL PNKTANDIQK  60
RFRELEPTKK PKADVPANGD RRKGVPWTEE EHRLFLLGLA KFGKGDWRSI ARNFVVSRTP  120
TQVASHAQKY FIRLNSMNKK DKRRASIHDI TSPTLPASVP NANPTTGLAP SGSSGAPSAD  180
GTAAAKGLTP AAAATAIAAA PAVAAATAAT AAGAQSAAAA MAAAAAAAAA ASSSVFAQAL  240
AMHGMAMPAA AAAAAAAANM AGMVPAMGMP PAPFMVQV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002954068.11e-116hypothetical protein VOLCADRAFT_106244
SwissprotQ9FNN63e-44SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A150FXJ20.0A0A150FXJ2_GONPE; Uncharacterized protein
STRINGXP_002954068.11e-116(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-36MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]