PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540343.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 28333.9 Da PI: 6.1613 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.1 | 1.7e-32 | 131 | 186 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ KN540343.1_FGP005 131 KTRRCWSPDLHRKFVAALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 186 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.7 | 128 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.27E-17 | 129 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 129 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-26 | 131 | 186 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-7 | 133 | 184 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGLDVGEMGV GAADLSLDLK MFAAKSVGRV RGKDTMGDCI RRLEEEMGKI EVFRRELPLC 60 VRLLADVIDV MKEEVEKKGG DRKEDEEEDA AGDKSKWMST AQLWTGNSGG RDAAAADPEQ 120 TQQQQQQQAR KTRRCWSPDL HRKFVAALQQ LGGPQVATPK QIRELMKVDG LTNDEVKSHL 180 QKYRLHNRPR VPSSTIVNQP IVLMKGLCYI PQEQSSSQSG SPEGPLHFSG SGMAGGGSSA 240 ATVSCEEEDG RSESYGWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-13 | 131 | 184 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 131 | 184 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 131 | 184 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 131 | 184 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540343.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070421 | 0.0 | AK070421.1 Oryza sativa Japonica Group cDNA clone:J023048M12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644652.1 | 3e-69 | myb family transcription factor EFM | ||||
TrEMBL | A0A446L0J4 | 7e-81 | A0A446L0J4_TRITD; Uncharacterized protein | ||||
STRING | OGLUM07G01230.1 | 1e-68 | (Oryza glumipatula) | ||||
STRING | OS07T0119300-01 | 1e-68 | (Oryza sativa) | ||||
STRING | ONIVA07G00160.1 | 1e-68 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 5e-32 | G2-like family protein |