PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540209.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 375aa MW: 40758.7 Da PI: 8.2082 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.5 | 6.8e-09 | 254 | 301 | 14 | 62 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 R + +rsR RK+++i+ Le+ v++L+ N aL e+++l+ ++ +l++ KN540209.1_FGP001 254 RRSGQRSRVRKLQYIADLERTVDSLQLRN-ALSMENKQLRRQITSLQQA 301 77899************************.7*************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 254 | 300 | No hit | No description |
CDD | cd14703 | 2.12E-13 | 254 | 302 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSEDPFVG EPPCWLDDLL ADSGKSHTLP 60 PLRRACSDSD AILDVLTSFQ SPIYPIDEGD PQPVGEAGES FNAAAEGGGS GAGIEGSCVY 120 GPNSPRQKTR LTSSESSMVN AVLENVPSNP LQYLMIDATS GVNCNVGAAN GTGDTGDAVC 180 HADQEKSLKR KKVARRESHG VRLGGAKRQW EDGEGGAVLQ EVKQRNGDES LTPIPEVVSE 240 AGWWAVTGRS MGWRRSGQRS RVRKLQYIAD LERTVDSLQL RNALSMENKQ LRRQITSLQQ 300 AKLIKDGQTQ MLKKETERLK QLSVRHRRSR SVTSCFEANS FGGGDPSAIN WQMLDMSKLS 360 LNGGAVVPPR GGYGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 259 | RRSGQRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540209.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063644 | 0.0 | AK063644.1 Oryza sativa Japonica Group cDNA clone:001-118-H05, full insert sequence. | |||
GenBank | AP004753 | 0.0 | AP004753.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0508B05. | |||
GenBank | AP005609 | 0.0 | AP005609.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | HQ324808 | 0.0 | HQ324808.1 Oryza sativa Japonica Group clone KCS608G03 b-zip protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623493.1 | 0.0 | basic leucine zipper 34 | ||||
TrEMBL | A3A7Q8 | 0.0 | A3A7Q8_ORYSJ; Uncharacterized protein | ||||
STRING | OS02T0538900-01 | 0.0 | (Oryza sativa) | ||||
STRING | OBART02G19520.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8137 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 2e-14 | bZIP family protein |