PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540090.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 466aa    MW: 52337.4 Da    PI: 5.7462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540090.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15130209186
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k +++s+v +  +l lp  f++++  k   +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l++
  KN540090.1_FGP004 130 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVH 209
                        899********************999433..5679***************..888888..9**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-17124209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20125208IPR015300DNA-binding pseudobarrel domain
CDDcd100177.23E-24128212No hitNo description
PfamPF023626.4E-14130209IPR003340B3 DNA binding domain
SMARTSM010192.4E-12130222IPR003340B3 DNA binding domain
PROSITE profilePS5086310.377130224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEQKMELVHQ RLALLDSSSG SDRDDDIGPR AIIIDCDEDD TDDVMEVVPL KMLMPKEVEN  60
EQRTVPGIPQ TCNTQNTSNG RTNTTEVPVK GQNKCASYLP KKSNVQTFCG SAMERAQEIQ  120
TKLPAEHPSF VKHMLHSHVV SGFWLGLPAG FCNKYLPKHD TDIVLEDENG NNHNTNYLGG  180
KQGLSAGWRG FAINHDIKVG DVVVFELVHI IRDKNISTTD RAPGLKSFYA CKKRKISKEA  240
TDNASKPKED PETTRVSSKV AHDDTQNLVH EAIDGIRFSD SEMSFDDVTS YSNFNIVVDG  300
LVIDCKFPDH QRRTYYELCC AQKSFLHRHL LRQLSLTLVV GVIMETINIA EGIRACGAGT  360
SSQEDFLIWK KTLQSFDLLG MNVAFLLKRV DDLLGLPEQP RDPSECGKYN ELKLERSRAE  420
EKVKALESMM LTVKDVLKKI DAEMEDMESS VRNHDIVLQK IATAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540090.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLB9EUJ50.0B9EUJ5_ORYSJ; Uncharacterized protein
STRINGOS01T0234100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-30B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]