PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539504.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 340aa MW: 36401.6 Da PI: 5.0118 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.8 | 3.6e-11 | 142 | 200 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ KN539504.1_FGP006 142 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 200 9************************************************9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-18 | 138 | 202 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.139 | 140 | 203 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.46E-11 | 142 | 197 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-11 | 142 | 197 | No hit | No description |
Pfam | PF00170 | 1.4E-9 | 142 | 200 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.90E-22 | 143 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MALSASTAAT AQSEILLGAA AIPDDIAFDT NLGVVGEVGG GGGDNDDDEE EEEDDEEEEM 60 EGAGGSRMFE MFLEAGGKLE APEPAAPLPP PPARPRHQHS MSMDGSTSLA SSAAGVAGRM 120 GADAKKAISD AKLAELALVD PKRAKRILAN RQSAARSKER KMRYIAELER KVQTLQTEAT 180 TLSAQLSMLQ RDTTGLTSEN SDLKIRVQTM EQQVRLQDAL NDRLRDEIQQ LKVATGQVNA 240 NCGKVGNFGL SSFGGANPQG YQRSHIQSLL AAQQLQQLQI HSQHQQQQMH LQQHHHLSTV 300 QQQLLQEGLP LPGDLKMKGI AAVSHAQNAG ASESHALSEP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539504.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064429 | 0.0 | AK064429.1 Oryza sativa Japonica Group cDNA clone:002-110-C11, full insert sequence. | |||
GenBank | AL606627 | 0.0 | AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855196 | 0.0 | CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633411.1 | 1e-154 | transcription factor RF2a-like | ||||
Swissprot | Q04088 | 6e-76 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | A0A0D3FXG2 | 1e-156 | A0A0D3FXG2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H2N0 | 1e-154 | A0A0E0H2N0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G15600.1 | 1e-154 | (Oryza nivara) | ||||
STRING | OBART04G17300.1 | 1e-157 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12302 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 8e-68 | bZIP family protein |
Publications ? help Back to Top | |||
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