PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539504.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 340aa MW: 36401.6 Da PI: 5.0118

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539504.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.6e-11	142	200	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ KN539504.1_FGP006 142 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 200 9************************************************9999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-18	138	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.139	140	203	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.46E-11	142	197	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-11	142	197	No hit	No description
Pfam	PF00170	1.4E-9	142	200	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.90E-22	143	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MALSASTAAT AQSEILLGAA AIPDDIAFDT NLGVVGEVGG GGGDNDDDEE EEEDDEEEEM 60 EGAGGSRMFE MFLEAGGKLE APEPAAPLPP PPARPRHQHS MSMDGSTSLA SSAAGVAGRM 120 GADAKKAISD AKLAELALVD PKRAKRILAN RQSAARSKER KMRYIAELER KVQTLQTEAT 180 TLSAQLSMLQ RDTTGLTSEN SDLKIRVQTM EQQVRLQDAL NDRLRDEIQQ LKVATGQVNA 240 NCGKVGNFGL SSFGGANPQG YQRSHIQSLL AAQQLQQLQI HSQHQQQQMH LQQHHHLSTV 300 QQQLLQEGLP LPGDLKMKGI AAVSHAQNAG ASESHALSEP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539504.1_FGP006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064429	0.0	AK064429.1 Oryza sativa Japonica Group cDNA clone:002-110-C11, full insert sequence.
GenBank	AL606627	0.0	AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855196	0.0	CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633411.1	1e-154	transcription factor RF2a-like
Swissprot	Q04088	6e-76	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0D3FXG2	1e-156	A0A0D3FXG2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H2N0	1e-154	A0A0E0H2N0_ORYNI; Uncharacterized protein
STRING	ONIVA04G15600.1	1e-154	(Oryza nivara)
STRING	OBART04G17300.1	1e-157	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12302	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	8e-68	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]