PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539360.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 573aa    MW: 62244.6 Da    PI: 3.9209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539360.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.54.8e-18786181
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81
                       lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L +  +++ +e +f ++++ k+ +gkr++r+++ g
  KN539360.1_FGP004  7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFLAEARAKNGKGKRQKRTVEGG 86
                       79****************************999**************743.4567899******************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-254116IPR003441NAC domain
PROSITE profilePS5100517.8147157IPR003441NAC domain
PfamPF023651.3E-8896IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG  60
DEAFFLAEAR AKNGKGKRQK RTVEGGGSGW VMHEYAVTSP ADLASSPIRL YRVRFSGYGK  120
KRKREPQFLN SHDDEDGGDR EHAAPRRAVA ETALFEGYGP LPAADATEQG SYGVIDGESS  180
LLFHGPPGQS QIVLPADHDI NLYSSAESLF HAIHGAETQT APLNEERCPP PLIVPLLQDK  240
NSTSDVMGDP SLLLPERIDD DELHCPLRES DMPDMSVSQT EGTEQKKLMP LLVSHCLPDL  300
IVPRAEEADA TAGAENPLLD EERWSPPQPQ PAPPTAALVN QNSYDLMAIS SLLFSDLPER  360
IDDDDLSVSQ TEGTELSEQG SSGVIGDDYW RVFHGLSDLI ALPEEEADAT GGAEREEIAL  420
LDEERRPQPQ PAPPTDALVP PLQGQNSYDV MADSSLLFAD LPGRIDDDEL QRSLRESDMP  480
DLFLSQTEEA GAGDGDGDGA APALNKQSNS SPLGITDSEA PMALSDLEFP ESMPLSDLEF  540
PESIDEVLSY IDFATDDCLD FDMDELFSDM PAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539360.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.11e-129NAC domain-containing protein 82
TrEMBLA0A0E0D3C60.0A0A0E0D3C6_9ORYZ; Uncharacterized protein
STRINGOMERI03G22020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.17e-10NAC domain containing protein 57