PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539356.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28226.9 Da PI: 5.7682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.0003 | 38 | 86 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L KN539356.1_FGP011 38 KIHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKAFILTDTTRILRDL 86 67789*********************997....57788888888888877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-11 | 34 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-8 | 34 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.972 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVPSERGDVA TAVRTAAADK LVHGPISDKK CRKKVPRKIH KSEREKLKRG HLNDLFGELG 60 NMLEADRQSN GKAFILTDTT RILRDLLSQV KYLRQENSTL QNESNYVTME RNELQDENGV 120 LRNEISDLQN ELRMRATGSP GWGHGATGPP LPIPPSPSMV FPSQQPMQPS PMTTSTVFPV 180 QQPLPQPTVI EPSSARQPLE LKLFLEAPPA EDPEPSEDQE APNNVARPQP RYPTEASSWP 240 ISLGLPRMED EQM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539356.1_FGP011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT830139 | 0.0 | CT830139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633301.1 | 1e-175 | transcription factor BHLH062-like | ||||
Refseq | XP_015633302.1 | 1e-175 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 2e-76 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A0D9Z836 | 1e-175 | A0A0D9Z836_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G19940.1 | 1e-176 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-28 | bHLH family protein |
Publications ? help Back to Top | |||
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