PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539312.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 454aa    MW: 50352.2 Da    PI: 8.0764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539312.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.3e-11120145227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C f++ t tCk+G++CkF H++
  KN539312.1_FGP009 120 GEKDCAFYMMTRTCKFGGSCKFDHPQ 145
                        7889********************97 PP
2zf-CCCH40.64.3e-13170195227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C+ff++tG Ck+G++CkF+H++
  KN539312.1_FGP009 170 GEPDCPFFMKTGKCKFGSKCKFNHPK 195
                        789*********************96 PP
3zf-CCCH215.8e-07209228827
                        GGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                        f+a+tG Ck+ + CkF+H++
  KN539312.1_FGP009 209 FYAKTGKCKFRAMCKFNHPK 228
                        9*****************96 PP
4zf-CCCH39.97.2e-13281306126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C+f++++G Ck+G++C+F+H+
  KN539312.1_FGP009 281 PGEVDCPFYMKMGSCKFGSTCRFNHP 306
                        57899********************9 PP
5zf-CCCH36.11.1e-11364385526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+f+++tG+Ck+ drCkF+H+
  KN539312.1_FGP009 364 VCDFYMKTGFCKFADRCKFHHP 385
                        7********************8 PP
6zf-CCCH33.95.5e-11419441527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         C f+++tG Ck+G +CkF H+p
  KN539312.1_FGP009 419 VCAFYMKTGVCKFGMQCKFDHPP 441
                        7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.615118146IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038118145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5119145IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8120145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258168196IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6168195IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10170195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5174195IPR000571Zinc finger, CCCH-type
SMARTSM003561.2205228IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.643209229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601280308IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7280307IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10282306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5284307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4286305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7358387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859359387IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7359386IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8363385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-6364385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408414442IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5414441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5417442IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8418441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4419439IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVLTEHTARE ESQLRNHARR QRAGPGINTR AWASMSDREV SQTGENRTWD MGYARENKAW  60
DGLLAVKAEG AREAKRCALG QPIMGSHSTV EQIEALYSSN TMTKRPRLES SLPIYPQRPG  120
EKDCAFYMMT RTCKFGGSCK FDHPQWVPEG GIPNWKEAAN VEESYPEQQG EPDCPFFMKT  180
GKCKFGSKCK FNHPKEKVNA LASGKTNDFY AKTGKCKFRA MCKFNHPKDI EIPSSQNEPE  240
SAVTVEGETD IGSAADSVSA KMQTPVAAAQ EFNSKGLPMR PGEVDCPFYM KMGSCKFGST  300
CRFNHPDRLV LNFPLPLGQT ILPTPESMLL NPSANFMQGF DFHAAHIPVG PGPVTYPQRP  360
GATVCDFYMK TGFCKFADRC KFHHPIDRSA PDPSANWEPA EESVQLTLAG LPRREDAVVC  420
AFYMKTGVCK FGMQCKFDHP PPQEAIAKVS NSGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539312.1_FGP009
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116820.0AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0E0FPK50.0A0A0E0FPK5_ORYNI; Uncharacterized protein
STRINGONIVA01G25920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-133floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]