PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539226.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 392aa    MW: 42981.4 Da    PI: 5.89
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539226.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000253413801054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  KN539226.1_FGP001 341 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 380
                        9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-6341388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6341387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00133341385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MTLQVNYSAN QNFPLMQSLK FEIGDLVAGI AVWVSVVAWQ FFQGERAGVL MVWQPVAQTR  60
FRVFKHENGI AVRVIACFQP SQDCQKILFA GCFLMGEKVN PWCHWSNPPW TENSANNLHP  120
PDVSLDNTNS VALPTYLSSD GYIYSGVAAS MPSIAASVTD RPVSFSSRFV TTLVPSVGLS  180
TAETLRKRPL VFFHNENNTF TVGPLLSKGA LDTVPELQGS NETNVTDVGA QDTEYEGCLK  240
VQELNNRVRK YPVQNDTMSV ESVASAGASQ PAKKRRLSSG TDRSVVDTAS SARPDHSVDQ  300
KHLSHDDDAQ SCCIGEVESD HQFALREGEE AEGDDGPDDR KRRRERIQET VAALRKIVPG  360
GIAKDATAVL DEAICYLKYL KLKVKTLGAV SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339343RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539226.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAK0656740.0AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLB8AQM70.0B8AQM7_ORYSI; Uncharacterized protein
STRINGORUFI03G20760.10.0(Oryza rufipogon)
STRINGONIVA03G21780.20.0(Oryza nivara)
STRINGOBART03G20100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820