PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539092.1_FGP008

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 117aa MW: 13104.8 Da PI: 5.2169

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539092.1_FGP008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.3	1.3e-54	23	111	2	90
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy++plk+yl++ KN539092.1_FGP008 23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHNN 111 89************************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-50	20	110	IPR009072	Histone-fold
SuperFamily	SSF47113	1.86E-37	25	111	IPR009072	Histone-fold
Pfam	PF00808	1.6E-28	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.4E-17	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	8.4E-17	75	93	No hit	No description
PRINTS	PR00615	8.4E-17	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MPDSDNDSGG PSNYAGGELS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV 60 SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEDY IDPLKLYLHN NFKMVRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-47	17	110	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539092.1_FGP008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288040	1e-175	AB288040.1 Oryza sativa Japonica Group OsHAP3I gene for HAP3 subunit of HAP complex, complete cds.
GenBank	AC120529	1e-175	AC120529.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0039N21, complete sequence.
GenBank	AK060225	1e-175	AK060225.1 Oryza sativa Japonica Group cDNA clone:001-002-G06, full insert sequence.
GenBank	AP014959	1e-175	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631006.1	9e-77	nuclear transcription factor Y subunit B-8
Swissprot	Q75IZ7	7e-78	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D3FJS2	2e-75	A0A0D3FJS2_9ORYZ; Uncharacterized protein
TrEMBL	I1PC90	2e-75	I1PC90_ORYGL; Uncharacterized protein
STRING	ORGLA03G0198600.1	3e-76	(Oryza glaberrima)
STRING	OBART03G21300.1	3e-76	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-66	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]