PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539025.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 445aa    MW: 48155.1 Da    PI: 7.3145
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539025.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM867.3e-271162493128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkat 86 
                        pG+rF Ptd+el+ ++Lk+k +  + ++++ + ik++d++k++  +L+      k+ +  wy Fs+r++ +++g r+ r   +t+ gyWk+ 
  KN539025.1_FGP013 116 PGVRFTPTDQELIIHFLKPKYTLGDaTPTNIIiIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARgikTTAVGYWKSN 207
                        9*******************87666444444459*************9534322334459*****************996534779****** PP

                NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +v++ +ge++g  ++L++  g++p+g+ t+W m+eyr+
  KN539025.1_FGP013 208 SAEADVVDDDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 249
                        ****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.828114276IPR003441NAC domain
SuperFamilySSF1019411.05E-31115275IPR003441NAC domain
PfamPF023653.5E-15116249IPR003441NAC domain
SuperFamilySSF578408.5E-13374411IPR000473Ribosomal protein L36
TIGRFAMsTIGR010224.4E-15374411IPR000473Ribosomal protein L36
PfamPF004442.1E-16374411IPR000473Ribosomal protein L36
HamapMF_0025116.932374411IPR000473Ribosomal protein L36
ProDomPD0021011.0E-10382411No hitNo description
PROSITE patternPS008280384410IPR000473Ribosomal protein L36
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAAINPVAGE VAAATAKAPP PAMATVRAPL PANHYSPYHS ASAAGSYAAN TQSTSSPRND  60
DVNQEDDNQR SKNSVEEAVA VAGGEPPAAT SALAIVPRHG DVGDADRPVF PYSDVPGVRF  120
TPTDQELIIH FLKPKYTLGD ATPTNIIIIK QLDVCKLNLD ELHGDLGLGK SLDGAWYVFS  180
PRSRYKERGV RPARGIKTTA VGYWKSNSAE ADVVDDDGEV IGRVNSLTLA LGHQPRGKAT  240
HWRMKEYRIP QFQIPLGQED SNRLLDEWVL CKLYHSFAYK QKGKCKVHEE GTKSDRGVQD  300
LSIDDDRKTC DIEANKPNEG VDNCNVNICN IEDSKPDGGL QDQSADDYNV HICDIEDSKP  360
DEGGGGDGRR KKKMKVRASV KRLCAYCKVV KRRGIVFIQC KANAKHKQRQ GFSTLAEAAA  420
AAACHHPAPP LLTNTSPAVA AAVAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-20992823171NO APICAL MERISTEM PROTEIN
1ut4_B4e-20992823171NO APICAL MERISTEM PROTEIN
1ut7_A4e-20992823171NO APICAL MERISTEM PROTEIN
1ut7_B4e-20992823171NO APICAL MERISTEM PROTEIN
4dul_A4e-20992823171NAC domain-containing protein 19
4dul_B4e-20992823171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539025.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375071e-157AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence.
GenBankAP0149591e-157AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P2Z00.0A0A0E0P2Z0_ORYRU; Uncharacterized protein
STRINGORUFI03G40160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-24NAC domain containing protein 25