PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539001.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 131aa MW: 14929.6 Da PI: 10.2203 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.8 | 1.3e-15 | 2 | 48 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL Av Y+k+Lq KN539001.1_FGP011 2 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILGDAVTYVKELQ 48 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.533 | 1 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-18 | 2 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-20 | 2 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-13 | 2 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.27E-14 | 3 | 52 | No hit | No description |
SMART | SM00353 | 1.9E-16 | 4 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILGDA VTYVKELQEK VKTLEEEDGG 60 GRPAAMVVRK SSCSGRVPEI EVRVWERSVL VRVQCGNSRG LLLRKKYWCT CVLCSDLQGT 120 IHGIKKILKN H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-16 | 1 | 57 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 11 | ERKRRE |
2 | 7 | 12 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539001.1_FGP011 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL713905 | 3e-69 | AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL731887 | 3e-69 | AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 3e-69 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618735.1 | 5e-60 | transcription factor NAI1 isoform X2 | ||||
Swissprot | Q9T072 | 3e-25 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A0P0YCR0 | 1e-58 | A0A0P0YCR0_ORYSJ; Os12g0632600 protein | ||||
STRING | OS12T0632600-00 | 2e-59 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-27 | bHLH family protein |