PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538978.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 498aa    MW: 54614.9 Da    PI: 8.5545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538978.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.4e-18155204255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  KN538978.1_FGP010 155 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 204
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-23152225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-19153228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-15155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-17155208No hitNo description
SMARTSM003531.4E-13159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPPAPA PPPAQDFFLK THDFLPQNGG  60
GHQWSLPFAA RAVAVASSRP QQQQQQPPPP ERKGGGGFMD AGSRSSGGAG FDDDDGHAAR  120
REVSSSLKEL TVRVEGKGGS CSGSAGTDQM PNTPRSKHSA TEQRRRSKIN DRFQLLRDLL  180
PHNDQKRDKA SFLLEVIEYI RFLQEKVQKY EVSYPEWNQE NAKVVPWTNI YFRSSWKNAQ  240
NKGQVPADHS PDPPELLKNG SPYMFPFTGN SDNNNAVETA AASGAQDQAE TDPMSRVSYR  300
SVDTPSPNNV ADKVTSQPHA QLVRPSPAEN HTVNCDKLNN SDLAIDEGTI SLSSQYSQEL  360
LNKLNHALEN SGIDLSQASI SVQINLGKRA MKRSTPAATS TSKVGFMSRI DTKSHYIMFV  420
VIEIGAGNGC YTWSSLIRHL IVKQWAVSLG WVMALKNIDK PQSDTNQITA DGLLLKTPDI  480
QPFFAPNCVR GAPRFYVY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538978.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
GenBankHQ8588650.0HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650490.20.0transcription factor BIM2 isoform X1
TrEMBLA0A0D3H1L50.0A0A0D3H1L5_9ORYZ; Uncharacterized protein
STRINGOBART08G18860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-57BES1-interacting Myc-like protein 2