PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538938.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 678aa MW: 71389.5 Da PI: 3.8592

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538938.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.1	2.3e-25	9	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 lppG++F+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L + +++ +e +fF+ ++ k+ +g+r++r + gyW+ + KN538938.1_FGP001 9 LPPGLKFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDEAFFFADARAKNGKGSRQKRtVEGGGYWQGQRMcvd 99 79**************************99***********743.456789***************5555997765444 PP NAM 89 .dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ v+ + e + k +L ++ ++ +kg ++ Wvmhey++ KN538938.1_FGP001 100 gERLVVPDGVEIAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 138 3455555455556667778887.566665.89******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-33	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	29.409	9	157	IPR003441	NAC domain
Pfam	PF02365	8.4E-15	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MAAAAGDGLP PGLKFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG 60 RGDEAFFFAD ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGVE IAWRKYVLSY 120 FADGEKGSSG WVMHEYAITA PADLASSTMR LYRIRFSGHG KKRKREPESQ SAHHDDGRAR 180 CAPQIAMPET ALLEDSAPPP QPVLPPAAVV NSVSDGAVPP PAPVVNCDSD VTDQYSSLVF 240 SDQPGSIYED ELQSFVPEFA ARNLFVSLPQ GSHEAEADVV GGALPAQSMS SFADVGGPEN 300 MDDQSCSGVV FANLSDLIVL PPVEASGAAP APSWASSLDN QNDEAPVFFE FPESMDDIVG 360 CFDFATMDDP SCTSAISEEP FLPPAAMVNH DDGYASDNAD QGCSGAVPLP SAVVDLPNET 420 DGADQSCSGV VDDSSMVFAN IHPLDSPAEG GHEAEAGAGG GRAAPAPSWV SSLDNQNDEA 480 PMFFELPESL DDMVSCFDFA AMDGQSCTSA VSETALIEEL VLPPAAMVNH HDDSVSDIAD 540 HGCSGAVPPP SAVVDLPDDS DGADQSCSGM VDDSLPGYYE AELKVPLEYA ARNPVDSPSK 600 GGHDHEAEVD ASGGAGSMMS SPDKEKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD 660 DLSCIDFTID DELFDLWS

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MAAAAGDGLP PGLKFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG  60
RGDEAFFFAD ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGVE IAWRKYVLSY  120
FADGEKGSSG WVMHEYAITA PADLASSTMR LYRIRFSGHG KKRKREPESQ SAHHDDGRAR  180
CAPQIAMPET ALLEDSAPPP QPVLPPAAVV NSVSDGAVPP PAPVVNCDSD VTDQYSSLVF  240
SDQPGSIYED ELQSFVPEFA ARNLFVSLPQ GSHEAEADVV GGALPAQSMS SFADVGGPEN  300
MDDQSCSGVV FANLSDLIVL PPVEASGAAP APSWASSLDN QNDEAPVFFE FPESMDDIVG  360
CFDFATMDDP SCTSAISEEP FLPPAAMVNH DDGYASDNAD QGCSGAVPLP SAVVDLPNET  420
DGADQSCSGV VDDSSMVFAN IHPLDSPAEG GHEAEAGAGG GRAAPAPSWV SSLDNQNDEA  480
PMFFELPESL DDMVSCFDFA AMDGQSCTSA VSETALIEEL VLPPAAMVNH HDDSVSDIAD  540
HGCSGAVPPP SAVVDLPDDS DGADQSCSGM VDDSLPGYYE AELKVPLEYA ARNPVDSPSK  600
GGHDHEAEVD ASGGAGSMMS SPDKEKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD  660
DLSCIDFTID DELFDLWS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538938.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003848	0.0	AP003848.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1715_A07.
GenBank	AP004379	0.0	AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638590.1	1e-108	uncharacterized protein LOC107275325
TrEMBL	Q6ZDP3	0.0	Q6ZDP3_ORYSJ; Os07g0195600 protein
STRING	ORUFI07G06210.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-14	NAC domain containing protein 47