PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538875.1_FGP030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 301aa MW: 31996.3 Da PI: 5.8342 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.7 | 1.2e-13 | 110 | 162 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ KN538875.1_FGP030 110 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 162 789***************************************99988888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-17 | 106 | 170 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.392 | 108 | 162 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-10 | 108 | 162 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-10 | 110 | 161 | No hit | No description |
Pfam | PF00170 | 1.8E-10 | 110 | 161 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 6.3E-53 | 177 | 294 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MLKQKLEKDL AAVAMWRASG TVPPERPGAG SSLLNADVSH IGAPNSIGGN ATPVQNMLSG 60 PSGGSGSQLV QNVDVLVKQP TSSSSREQSD DDDMEGEAET TGTARPADQR LQRRKQSNRE 120 SARRSRSRKA AHLNELEAQV SQLRVENSSL LRRLADVNQK YNDAAVDNRV LKADVETLRA 180 KVKMAEDSVK RVTGMNALFP AASDMSSLSM PFNSSPSEAT SDAAVPIQDD PNNYFATNND 240 VGGNNNYMPD IPSSAQEDED FVNGALAAGK IGRTASLQRV ASLEHLQKRM CGGPASSGST 300 S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538875.1_FGP030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068589 | 0.0 | AK068589.1 Oryza sativa Japonica Group cDNA clone:J013153H07, full insert sequence. | |||
GenBank | CT829375 | 0.0 | CT829375.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631619.1 | 0.0 | bZIP transcription factor RISBZ2-like | ||||
Swissprot | Q7X9A8 | 0.0 | RSBZ2_ORYSJ; bZIP transcription factor RISBZ2 | ||||
TrEMBL | Q10C28 | 0.0 | Q10C28_ORYSJ; BZIP transcription factor family protein, expressed | ||||
STRING | OGLUM03G37110.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS03T0796900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3488 | 38 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.1 | 9e-35 | bZIP family protein |
Publications ? help Back to Top | |||
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