PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538862.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 280aa    MW: 31793.7 Da    PI: 6.5134
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538862.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.85.8e-24134190155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 
                        k rl Wt++LH++F+ av++L G++kA+Pk+il +mkvk Lt+e+v+SHLQ   kYR+
  KN538862.1_FGP004 134 KSRLTWTTQLHRQFIAAVNHL-GEDKAVPKKILGIMKVKHLTREQVASHLQvhiKYRM 190
                        68*******************.*****************************7777886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011010.96163IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.95E-71779IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-81873No hitNo description
PROSITE profilePS5129412.264131190IPR017930Myb domain
SuperFamilySSF466893.23E-16132187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-24133194IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-22134184IPR006447Myb domain, plants
PfamPF002495.9E-6136185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAGDQGKEEA VAESTSWRQD PATVMASSGD TNTVMKYVAN GVSDFLLKPV RIEELSNIWQ  60
HIFRKQMQDH KNNNMVGNLE KPGHPPSILA MARATPATIR STATEASLAP LENEVRDDMV  120
NYNGEITDIR DLRKSRLTWT TQLHRQFIAA VNHLGEDKAV PKKILGIMKV KHLTREQVAS  180
HLQVHIKYRM QLKKSIPTTS KHGATLSSTA LDKTQDHPSR SQYFNQDGCM EIMDYSLPRD  240
DLSSGSECML EEQNDYSSEG FQDFRWDSDK QEYGPCFWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16133194462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538862.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6092460.0KC609246.1 Oryza longistaminata early heading date 1 (Ehd1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876814.10.0two-component response regulator ORR30
SwissprotQ7Y0W30.0EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLI1QV720.0I1QV72_ORYGL; Uncharacterized protein
STRINGORGLA10G0110500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-31response regulator 2