PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538842.1_FGP025 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 129aa MW: 13897.8 Da PI: 8.5054 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.3e-05 | 22 | 50 | 21 | 54 |
HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 L++l+ + +K + a++L +++eYIk L KN538842.1_FGP025 22 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 50 5666666665.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.194 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-11 | 12 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 13 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-5 | 13 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MVIDFLPIKF HVRKEKLGDR VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP 60 YLKNRQQVPH LKNSAGVDND GGGGGGEATA ASKRDLTGRG LCLVPISSTF AVASETPVDF 120 WTPFGAAFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538842.1_FGP025 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004590 | 5e-86 | AP004590.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577G06. | |||
GenBank | AP014964 | 5e-86 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648821.1 | 9e-75 | transcription factor bHLH112 isoform X2 | ||||
Swissprot | Q8GXT3 | 7e-37 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A3BQ81 | 2e-86 | A3BQ81_ORYSJ; Os08g0179400 protein | ||||
STRING | OGLUM08G05080.1 | 7e-81 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 5e-39 | bHLH family protein |
Publications ? help Back to Top | |||
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