PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538809.1_FGP036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 167aa MW: 18385.9 Da PI: 6.6236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 4.9e-07 | 2 | 41 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq KN538809.1_FGP036 2 RRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 41 9******************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.576 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0014 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-4 | 2 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.14E-8 | 2 | 45 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-13 | 2 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-12 | 3 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
VRRERISERM KLLQSLVPGC NKITGKALML DEIINYVQSL QRQVEFLSMK LATMNPQLDF 60 DSHYMPSKDM SHMPVPAYPS GDPTTTTAFS YTGSPATADP FAAYNCWELD LHTAMQMGVT 120 ATGLSQDGPI TTMAPSPSPF SHHPPPHGFY GGQQQQGTTV NHMKAEP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538809.1_FGP036 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108605 | 0.0 | AK108605.1 Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence. | |||
GenBank | FO681395 | 0.0 | FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product. | |||
GenBank | FO681475 | 0.0 | FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635665.2 | 3e-95 | LOW QUALITY PROTEIN: transcription factor bHLH62 | ||||
TrEMBL | A0A0D3FUI3 | 3e-98 | A0A0D3FUI3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G08520.1 | 5e-99 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12547 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 4e-34 | bHLH family protein |