PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538808.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 820aa MW: 88780.1 Da PI: 4.6001

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538808.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	52	83	1	27
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ KN538808.1_FGP011 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83 8********88***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.6E-12	48	89	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.24E-6	49	88	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.338	51	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	52	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.70.330	5.3E-6	166	247	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS51687	15.994	292	587	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	1.08E-31	294	320	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	1.08E-31	352	455	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	1.08E-31	514	627	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	8.4E-22	537	623	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	8.4E-22	761	781	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0000166	Molecular Function	nucleotide binding
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MEMEMEDNKA PSPPPPMESD VAGEKRKRED DASSSAVPAA ANNSGGAQHP MWKTSLCSFF 60 RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAE EVEEEVVTVD 120 DKALDKCLVG LPRGWANDRL KTFLQDKATT TTSFITLSCF TTVYSNYFST FGIVWILPSV 180 LVADGYSYDG INMKGISYAT AKKKKGMTVG FVTFENIEQL KNAIEVLTEN QSGGKEIKIA 240 DANRRSHQKL HTEKPVSDNG VATENRTSVD VPPGETSAPE AAISSKKSVR DAVTPLAHMS 300 YNDQLEHKKN SVAQILKRLT RNARKACPTG IPLPDWVFKS KEIGGLPCKL EGILESPVIN 360 GYRNKCEFSV GFSLEGKKTV GFMLGNFREG VTAVEEPVDC PNVSEISCKY ALMFQDFLQS 420 SSLPVWNRVD NCGFWRQFTV REGRCPTQAV AQNAETQISE VMLIVQVCST GVDDALMKDE 480 FDKLTVALQQ GAATCSPPLP LTTIVVQDHK GISNAAPSDC PLIPLLVPKV DQSEGTVDKT 540 RIHDHIGNLR FSISPTAFFQ VNTLAAERLY TLAGDWANLN SGTLLFDVVG IEMNESAVSD 600 AQRNALINGV SNCRFVCGKA EDVMGSLLSE YLGSPQQDIP VSEGALSGTV KDEEVIDGSK 660 NSGENLDSSM QKNDNGESQQ LKDAPADSSS AVDEIKGNSN DRVGNGLEGS HDEYNEVAGE 720 DIHGEASLIN ESVDLKVSDC LEDRKTSDDG SSISDNDVTA ATACQFEDIV AIVDPPRVGL 780 HPTDQAYTLN LIGDQGIEDS STNSTSSVNP KRGQGVPVFI

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MEMEMEDNKA PSPPPPMESD VAGEKRKRED DASSSAVPAA ANNSGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAE EVEEEVVTVD  120
DKALDKCLVG LPRGWANDRL KTFLQDKATT TTSFITLSCF TTVYSNYFST FGIVWILPSV  180
LVADGYSYDG INMKGISYAT AKKKKGMTVG FVTFENIEQL KNAIEVLTEN QSGGKEIKIA  240
DANRRSHQKL HTEKPVSDNG VATENRTSVD VPPGETSAPE AAISSKKSVR DAVTPLAHMS  300
YNDQLEHKKN SVAQILKRLT RNARKACPTG IPLPDWVFKS KEIGGLPCKL EGILESPVIN  360
GYRNKCEFSV GFSLEGKKTV GFMLGNFREG VTAVEEPVDC PNVSEISCKY ALMFQDFLQS  420
SSLPVWNRVD NCGFWRQFTV REGRCPTQAV AQNAETQISE VMLIVQVCST GVDDALMKDE  480
FDKLTVALQQ GAATCSPPLP LTTIVVQDHK GISNAAPSDC PLIPLLVPKV DQSEGTVDKT  540
RIHDHIGNLR FSISPTAFFQ VNTLAAERLY TLAGDWANLN SGTLLFDVVG IEMNESAVSD  600
AQRNALINGV SNCRFVCGKA EDVMGSLLSE YLGSPQQDIP VSEGALSGTV KDEEVIDGSK  660
NSGENLDSSM QKNDNGESQQ LKDAPADSSS AVDEIKGNSN DRVGNGLEGS HDEYNEVAGE  720
DIHGEASLIN ESVDLKVSDC LEDRKTSDDG SSISDNDVTA ATACQFEDIV AIVDPPRVGL  780
HPTDQAYTLN LIGDQGIEDS STNSTSSVNP KRGQGVPVFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538808.1_FGP011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120156	0.0	AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636996.1	0.0	zinc finger CCCH domain-containing protein 24 isoform X1
Swissprot	Q8L7S3	0.0	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A0E0D9W9	0.0	A0A0E0D9W9_9ORYZ; Uncharacterized protein
STRING	OMERI04G00140.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8493	31	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]