PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538782.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 109aa MW: 11843.3 Da PI: 4.8081 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.1 | 6.9e-10 | 53 | 108 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLp 48 lp+G++F+Ptd+el+ e+L++kv+ ++++ i+ +i++++P++Lp KN538782.1_FGP005 53 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP 108 799************.99*****988856665543333333766646*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-10 | 47 | 109 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.575 | 53 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MDGVVAEEAG GGGGGHRQLI GSRIEEHRKY MSEESCCPRC GHKIDRKLDW VGLPAGVKFD 60 PTDQELIEHL EAKVRPGGEA AAHPLIDEFI PTIEGEDGIC YTHPEKLPG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538782.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003713 | 3e-90 | AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12. | |||
GenBank | AP014962 | 3e-90 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 3e-90 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641894.1 | 9e-68 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_015641895.1 | 9e-68 | NAC domain-containing protein 75 isoform X2 | ||||
Swissprot | Q9M0F8 | 4e-35 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A3BCR4 | 6e-69 | A3BCR4_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI06G19520.1 | 5e-67 | (Oryza rufipogon) | ||||
STRING | OS06T0560300-00 | 9e-69 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 2e-37 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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