PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538762.1_FGP010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 152aa MW: 16568.6 Da PI: 5.8874 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.9 | 1e-14 | 29 | 76 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+h+e+Er+RR+riN +++Lr l+P+a +++Ka+ L ++v+Y+++L KN538762.1_FGP010 29 RRSHSEAERKRRERINAHLDTLRGLVPSA-----SRMDKAALLGEVVRYVRKL 76 99**************************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 26 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.034 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-15 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-12 | 29 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-11 | 31 | 79 | No hit | No description |
SMART | SM00353 | 2.1E-12 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MVAARSGDDA ELGLDVECLA AAARRTRARR SHSEAERKRR ERINAHLDTL RGLVPSASRM 60 DKAALLGEVV RYVRKLRSEA AGSAAVDVPG EGDEVVVEEE EVEVEGCSCD AGERQAARRV 120 KASAALRAVI MSQEELLAVE SYKQRRFSAD FA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 40 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538762.1_FGP010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005755 | 2e-95 | AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14. | |||
GenBank | AP014965 | 2e-95 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576618.2 | 4e-30 | transcription factor bHLH30 | ||||
TrEMBL | A0A0E0QSH0 | 7e-73 | A0A0E0QSH0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G14130.1 | 1e-73 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 3e-08 | bHLH family protein |