PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538754.1_FGP029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 216aa MW: 23713.2 Da PI: 6.868 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76 | 5.1e-24 | 2 | 44 | 13 | 55 |
G2-like 13 rFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ KN538754.1_FGP029 2 AFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 44 6*****************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.715 | 1 | 47 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 2 | 45 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-8 | 2 | 45 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-16 | 2 | 46 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDHE SGHERGAISS 60 ESSRLYGLFQ RRQQAPMQTF DFKNCNSFSR NQEWAFNQQH AAARAAGAVN GHGPAKGLIH 120 EMIFRKEGKP TSHLFDVRDA IASTRFVTPT HNNGVVYAAE GKDESDRGDA PRDAGEDDGG 180 GGGGGGDQRQ DAGLAAEFEP ERGRSQISQQ EEEVLE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538754.1_FGP029 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK073606 | 1e-133 | AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641453.1 | 8e-75 | uncharacterized protein LOC4341235 isoform X1 | ||||
TrEMBL | A0A0D3GHK7 | 1e-73 | A0A0D3GHK7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0AAN3 | 9e-74 | A0A0E0AAN3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G18870.1 | 1e-74 | (Oryza glumipatula) | ||||
STRING | OBART06G17710.1 | 2e-74 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-23 | G2-like family protein |