PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538708.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 510aa    MW: 55951.2 Da    PI: 4.785
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538708.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.7e-40127186261
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  KN538708.1_FGP009 127 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 186
                        7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31113184IPR003851Zinc finger, Dof-type
PfamPF027012.9E-32129185IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.863131185IPR003851Zinc finger, Dof-type
PROSITE patternPS013610133169IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSVIANCDWG YLQDQHKETE ESKDDEMKVD VPQEEEDNEM KVDAPQEKKD NEVTADVPEE  60
KGNDEMRVDA SESIESIEPV SRSTLDNKKE DQGQMNNVEE KAASDSKDEN EKTANDESGQ  120
DKVLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR  180
RKSKSSSLHY RHLLMAPDCM MGSRVEISKS MNPEAFASAH SPIARNETVL KFGPEVPLCE  240
SMASVLNIQE QNGTNAAAVP TGENQEDNSC ISSITSHNVL PENAAQVDKN STPVYCNGVG  300
PVPQYYLGAP YMYPWNIGWN NVPMMVPGTS MPESASQSES CSTSSAPWMN MNSPMMPVAS  360
RLSAPPFPYP LVPPALWGCL SSWPATAWNI PWIRTNGGCM SPSSSSNSSC SGNGSPLGKH  420
SRDSSLPLKE DKEEKSLWVP KTLRIDDPDE AAKSSIWATL GIKPGDPGIF KPFQSKGESK  480
GQAASESRPA RALQANPAAL SRSQSFQETS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538708.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013830.0AP001383.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0453A06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618265.10.0cyclic dof factor 2
TrEMBLA0A0E0C0B50.0A0A0E0C0B5_9ORYZ; Uncharacterized protein
STRINGOMERI01G10170.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-71cycling DOF factor 2