PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538695.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 438aa    MW: 46914.2 Da    PI: 6.6379
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538695.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.4e-3966125261
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k s
  KN538695.1_FGP001  66 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKIS 125
                        7899****************************************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3163123IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3168123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.38870124IPR003851Zinc finger, Dof-type
PROSITE patternPS01361072108IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MRISEEKPCT DQELDADQMD SSSFNSSSEC ENQTPSNDEM TGSESKSEAA QTEGGGSSEE  60
KVLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKSC QRYWTAGGSM RNLPVGAGRR  120
KSKISTANCR SILITGSNLA APAGDAPLYQ LSIKGDQTAT AVKFAPDSPL CNSMASVLKI  180
GEQSKNAKPT STAQPRNGET QTCPASGTTS DSPRNEPVNG AVSGHQNGIV GHSGVPPMHP  240
IPCFPGPPFV YPWSPAWNGI PAMAPPVCPA PTEPANSSDN GSTTSVQWSM PPVMPVPGYF  300
PVIPSSVWPF ISPWPNGAWS SPWIQPNCSV SASSPTSTST CSDNGSPVLG KHSRDSKPQG  360
DDKAEKNLWI PKTLRIDDPD EAAKSSIWTT LGIEPGDRSM FRPFQSKPES REQISGAARV  420
LQANPAALSR SQSFQETT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538695.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1040950.0AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
GenBankAP0051670.0AP005167.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY2244300.0AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647890.10.0cyclic dof factor 2
TrEMBLA0A0E0EGB40.0A0A0E0EGB4_9ORYZ; Uncharacterized protein
STRINGOMERI07G23800.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-79cycling DOF factor 2