PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538692.1_FGP040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 1392aa MW: 151665 Da PI: 7.9795 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 202 | 224 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + Hi +H KN538692.1_FGP040 202 FECPVCNKTFEEQSRYFGHIGSH 224 89****************99777 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 874 | 896 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + Hi +H KN538692.1_FGP040 874 FECPVCNKTFEEQSRYFGHIGSH 896 89****************99777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 10.023 | 27 | 100 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 1.14E-6 | 31 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.890.10 | 8.0E-4 | 32 | 81 | IPR001739 | Methyl-CpG DNA binding |
Pfam | PF01429 | 3.5E-5 | 37 | 80 | IPR001739 | Methyl-CpG DNA binding |
PROSITE profile | PS50157 | 8.642 | 153 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.59 | 153 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 155 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 202 | 229 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 202 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 204 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50982 | 10.023 | 699 | 772 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 1.14E-6 | 703 | 754 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.890.10 | 8.0E-4 | 704 | 753 | IPR001739 | Methyl-CpG DNA binding |
Pfam | PF01429 | 3.5E-5 | 709 | 752 | IPR001739 | Methyl-CpG DNA binding |
PROSITE profile | PS50157 | 8.642 | 825 | 853 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.59 | 825 | 848 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 827 | 848 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 874 | 901 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 874 | 896 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 876 | 896 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1392 aa Download sequence Send to blast |
MATEEELMGF ISSLAGQWVN KRMRRKLVDA SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS 60 YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT 120 SMDSQSNLPV ASATFYSHSR DQDETVADDI NSYECQQCNS TFHGQSAYAH HLITFHKVSS 180 KRRKSNKVSK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH IGSHAKYQGL TPEAFLQTLS 240 GKVGNDSFAG LSCSLQDLVG SPQLNEKTTA NEARSQHHNC STKHGGNSTR GIDLFNSNHP 300 ANFNGHNQTW CRSDEIPPTT EAQSTWTYRN NEMNCADRTV PRTGPQPNDH MDCRVSGFAE 360 ATNFNDQAGR HQGFRPSSFG TTNHCQGQII DHAVAASKHA EVNNSMKSRD VNLNSRLNTI 420 SFPIATANNE TSTALNDMNR SCITGKGFSG SFSNNDGAAS IVLPSSGLNN KISSSLGVAD 480 RSSIAARSFN AGYVYENGAS EANNIGNKNN TMVYQTSLAM RPVSPLDWRT PKAEGHDGIG 540 ELLNLVHTGY LSTLFKHSHF FSHWISLQDS CTLNVIQSKQ SHVAKNAQPK QRSSEPEASN 600 KKTTTIHKFF KFMHVFLRSV VVPSPPPCIL SPTPMPLPPA LPSSPRGVSV DLVSLSRLAD 660 PYDAELGKRT ARMTTEEELM GFISSLAGQW VSQRMRRKLV DASFFGDHLP SGWRLQLGIK 720 RKDRKAWVNC FSYVSPKGQS FATCQEVSAY LMSLLGYPEF KTDNIEYGST QQHGLCADDG 780 VNVLGVQHQI GTGMDSQSIL PVASITFSSH SRDQDETDAD DINSYECQQC NSTFHGQSAY 840 AHHLITFHKV SSKRRKSNKV SKFGEPVIGK DGKFECPVCN KTFEEQSRYF GHIGSHAKYQ 900 GLTPEAFLQT LSGKVGNDSF AGLSCSLQDL VGSPQLNEKT TANEARSQHH NCSTKHGGNS 960 TRGIDLFNSN HPANFNGHNQ TWCRSDEIPP TTEAQSTWTY RNNEMNCADR TVPRTGPQPN 1020 DHMDCRVSGF AEATNFNDQA GRHQGFRPSS FGTTNHCQGQ IIDHAVAASK HAEVNNSMKS 1080 RDVNLNSRLN TISFPIATAN NETSTALNDM NRSCITGKGF SGSFSNNDGA ASIVLPSSGL 1140 NNKISSSLGV ADRSSIAARS FNAGYVYENG ASEANNIGNK NNTMVYQTSL AMRPVSPCDL 1200 QLGFSGQKQQ ILPGYGELRP AASGSPQLGG MAANSSIPTR PSQPQFGSMA RTDALPTGPS 1260 QPGSLARPNF VPTGFSQFAS RPPTSVPPAD SSQFAGGMAR QNIPTTSEPT LVLGYTPQMV 1320 NGPPAQLGWD LSLSRMVSEG MLPVLCIWCN SQFHHFGPID AQQSGSFGFI CPACKEKMSG 1380 NPNAPNNGPW QP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538692.1_FGP040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK069097 | 0.0 | AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650380.1 | 0.0 | uncharacterized protein LOC4345880 isoform X1 | ||||
TrEMBL | B8BBU6 | 0.0 | B8BBU6_ORYSI; Uncharacterized protein | ||||
STRING | OS08T0485700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 |