PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538688.1_FGP150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 158aa MW: 17424 Da PI: 9.9393 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 6e-14 | 19 | 57 | 5 | 43 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +k r fskR ++i+ KA+EL +LC++ vav+ +s++ KN538688.1_FGP150 19 DKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 57 56778999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.914 | 8 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-9 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.46E-15 | 9 | 69 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-14 | 9 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-15 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MVKCRARTTR KKIEIKHGDK KVRDACFSKR HTTIFNKANE LAILCGVMVA VVFVSPNANG 60 GIFSFGYPSV SSVANRFLAN APNNTSVSSS TQSGRDVEIR ELEREEIELK EHLQASTDQN 120 KLLREAIAAR DGRQLMLLLQ SDCSELGPKG LVRGGTIY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538688.1_FGP150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134240 | 0.0 | AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651224.1 | 2e-65 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | Q10NZ5 | 1e-103 | Q10NZ5_ORYSJ; Os03g0253400 protein | ||||
STRING | ORGLA03G0104600.1 | 1e-104 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20420 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-13 | AGAMOUS-like 29 |