PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538687.1_FGP060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 20757.1 Da PI: 7.0009 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.6e-06 | 81 | 118 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L KN538687.1_FGP060 81 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 118 67788899********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.744 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 79 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-6 | 79 | 123 | No hit | No description |
SMART | SM00353 | 0.0061 | 80 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 83 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MADEHEWWNS PCSARTGDDE AACSTAPADG GDESAPNAER LHHHQDAGSP APATRSSPGS 60 PAAAKKPRIE APSPMPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD 120 QVASLSSPYL RCGRPVQLQH QQGSHKVNGN CEGKQLDLRS RGLCLVPVAS TYTVASETAT 180 EFWHPTFGGT FR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538687.1_FGP060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837834 | 0.0 | CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638164.1 | 1e-106 | transcription factor bHLH68 isoform X1 | ||||
Swissprot | Q8GXT3 | 2e-48 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A0D3G9G9 | 1e-106 | A0A0D3G9G9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B8AZQ5 | 1e-108 | B8AZQ5_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PX06 | 1e-106 | I1PX06_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0190400.1 | 1e-107 | (Oryza glaberrima) | ||||
STRING | OBART05G21860.1 | 1e-107 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 4e-51 | bHLH family protein |
Publications ? help Back to Top | |||
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