PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538686.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 308aa    MW: 33841.1 Da    PI: 8.2903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538686.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-16115167156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++g+
  KN538686.1_FGP012 115 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 167
                        57****************988532...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.282180IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-65281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-75381IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-18115175IPR016177DNA-binding domain
CDDcd000185.15E-12115176No hitNo description
PfamPF008473.0E-11115166IPR001471AP2/ERF domain
PROSITE profilePS5103219.48116174IPR001471AP2/ERF domain
SMARTSM003801.4E-32116180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-19116174IPR001471AP2/ERF domain
PRINTSPR003674.2E-5117128IPR001471AP2/ERF domain
PRINTSPR003674.2E-5156176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGFWGSRKPG AKNVILICIF FSEPVVPFFL RKDYQWFHDS DTVTCCFFAF SGYDIEDKAA  60
RAYDLAALKY WGASATTNFP KESYVKEIEE MQKMSKQELV ASLRRKSSGF SRGASIYRGV  120
TRHHQHGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDVA ALKFRGANAV TNFEPSRYNL  180
EAISQSDLPI SVSGRRHNSS SNSSKPAPEA GGQIALMSSP PISQQSSSAP PYLLHNLLQF  240
QPCGPPYAPP PPPPPPPQAL PLPGSYNFAE PVGFYWPYGD GEEQKVQLNS SMVGMASGGF  300
LHLANAAN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538686.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098390.0AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629274.11e-135AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6PQQ44e-73BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D9Z6C60.0A0A0D9Z6C6_9ORYZ; Uncharacterized protein
STRINGOGLUM03G15150.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.19e-66AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]