PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN48908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19836.6 Da PI: 8.2117 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.9 | 1.1e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++apyfpa++p+kf vhk+FGasnv k+lk+lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++ KHN48908.1 13 PCAACKLLRRRCTPDCAFAPYFPADEPQKFDSVHKVFGASNVNKMLKELPEHQRSDAVSSMVYEAKARVRDPVYGCVGAISSLQQQVDVLQTQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e KHN48908.1 112 E 112 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.946 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-45 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MKESGRKQGT MSPCAACKLL RRRCTPDCAF APYFPADEPQ KFDSVHKVFG ASNVNKMLKE 60 LPEHQRSDAV SSMVYEAKAR VRDPVYGCVG AISSLQQQVD VLQTQLALAQ AEVVHMRMRQ 120 FSPLSDQQQQ PSVLPEASNA SSENLYHSSR LLSSQTKSLF SMDMVVDQAN MGQSLWSY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-50 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-50 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN48908.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT097864 | 0.0 | BT097864.1 Soybean clone JCVI-FLGm-16M12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241363.1 | 1e-131 | uncharacterized protein LOC100790989 | ||||
Refseq | XP_028202173.1 | 1e-131 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 3e-68 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A445GYE8 | 1e-129 | A0A445GYE8_GLYSO; LOB domain-containing protein 4 | ||||
TrEMBL | C6TJL6 | 1e-129 | C6TJL6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G41020.1 | 1e-130 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-61 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|