PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48856.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 324aa    MW: 36830.4 Da    PI: 6.6659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48856.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171361148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G ++W+++++  g + R++k+c++rw +yl
       KHN48856.1 13 RGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGsLQRCGKSCRLRWINYL 61
                     788********************************************97 PP
2Myb_DNA-binding55.41.4e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
       KHN48856.1  67 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEIKNFWNS 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.868861IPR017930Myb domain
SuperFamilySSF466898.98E-2910108IPR009057Homeodomain-like
SMARTSM007175.2E-141263IPR001005SANT/Myb domain
PfamPF002493.2E-161361IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-251468IPR009057Homeodomain-like
CDDcd001671.00E-111661No hitNo description
PROSITE profilePS5129426.56662116IPR017930Myb domain
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002498.4E-1667110IPR001005SANT/Myb domain
CDDcd001674.46E-1269109No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGHRCCSKQK IKRGLWSPEE DEKLLRYINT HGQKSWSSVP KFAGSLQRCG KSCRLRWINY  60
LRPDLKRGSF TAEEEQIIID IHRILGNRWA QIAKHLPGRT DNEIKNFWNS CIKKKLISQG  120
LDPQTHTLLS SHRRSSVCTI SNIHQNSNSI FIMSSHIPNA PLENTSKTFS TLPKPPANIV  180
QIPSVVVSSE FQTTTSNNGE PRQHLPYELL MENAITNICS PTYMNPSAVE LFNNDNNVNW  240
VSTVNVEDFS AQTLEEGTQV QVQHEKDKTC EDMGIDVREA NKGNIETSAS FESSNFDFGL  300
LESVLTSEFI SYDFNCMDEL AWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131167108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203690.10.0transcription factor MYB86-like
TrEMBLA0A445GYN00.0A0A445GYN0_GLYSO; Transcription factor MYB86
STRINGGLYMA15G41810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-86myb domain protein 67
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]