PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN48238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 31801.4 Da PI: 8.4862 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H +H KHN48238.1 111 YQCKTCNRYFPSFQALGGHRASH 133 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 192 | 214 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H KHN48238.1 192 HECSICGAEFSSGQALGGHMRRH 214 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.06E-9 | 110 | 133 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.8E-11 | 111 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.06E-9 | 187 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.7E-4 | 188 | 214 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.4E-13 | 191 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 192 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 192 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 194 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MQVQEELLVA SKDHTHQMMM IKGKRTKRQR APSPLSLAMP YNNSTSSSTN NSIDSATTSP 60 SPTNTIELRE DEDMANCLIL LAQGRHHVAA PTSYHNNDNN DNHKSTSLYL YQCKTCNRYF 120 PSFQALGGHR ASHKKPKQNG TFSSEAVTTF VEENNDRYDP TTSTTLSLKI PNGVNNNMCS 180 TTTTTTTKAK VHECSICGAE FSSGQALGGH MRRHRTLVNA SLATSMSGGN VGVGGSNEFQ 240 EAKKPLKLDL NLPALPEDDH RESKFSFQQR EKNVIVFSKQ SSLVDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN48238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196964.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A445HFV8 | 0.0 | A0A445HFV8_GLYSO; Zinc finger protein ZAT5 | ||||
STRING | GLYMA13G20950.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-52 | C2H2 family protein |
Publications ? help Back to Top | |||
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