PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN47071.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 352aa MW: 39678.4 Da PI: 7.6946

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN47071.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5e-11	67	95	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le KHN47071.1 67 KMLRRLAQNREAARKSRLRKKAYVKQLES 95 6679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-4	62	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-6	67	100	No hit	No description
Pfam	PF00170	4.0E-8	67	95	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-7	69	95	No hit	No description
PROSITE pattern	PS00036	0	70	85	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.2E-26	156	229	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDIYEPFQQV SMWGGNFKVD GGLNSIASPM LMVGTNVENK SEYIPREPRE PSGSGADQET 60 TNKDVNKMLR RLAQNREAAR KSRLRKKAYV KQLESSRLKL MQLELEIGKA RKQGLYMGTA 120 LDAGYIGSTS ETINPGIVAF EIEYGQWVEE QERRNEELRH AFQTQAPDVQ LNVVVQSVLN 180 HYSNLFRMKA EAVKADVLYL LSGAWKPSVE RIFLWIGGSR PSQLLNIIVP QLEPLTDQQI 240 VSINNLRLSS QQAEDALSQG LEKLQQSLVH DMAVDPLGVG NLGLQMARTM EKFEALEGFV 300 NQADHLRQQT LLHMSRILSI HQAARGLLAL GEYFHRLRTL CSLWSARSCE LA

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDIYEPFQQV SMWGGNFKVD GGLNSIASPM LMVGTNVENK SEYIPREPRE PSGSGADQET  60
TNKDVNKMLR RLAQNREAAR KSRLRKKAYV KQLESSRLKL MQLELEIGKA RKQGLYMGTA  120
LDAGYIGSTS ETINPGIVAF EIEYGQWVEE QERRNEELRH AFQTQAPDVQ LNVVVQSVLN  180
HYSNLFRMKA EAVKADVLYL LSGAWKPSVE RIFLWIGGSR PSQLLNIIVP QLEPLTDQQI  240
VSINNLRLSS QQAEDALSQG LEKLQQSLVH DMAVDPLGVG NLGLQMARTM EKFEALEGFV  300
NQADHLRQQT LLHMSRILSI HQAARGLLAL GEYFHRLRTL CSLWSARSCE LA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269\|PubMed:12897257}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN47071.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235902	1e-124	AC235902.2 Glycine max clone GM_WBc0165F14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028230234.1	0.0	transcription factor TGA3-like isoform X1
Refseq	XP_028230235.1	0.0	transcription factor TGA3-like isoform X1
Refseq	XP_028230236.1	0.0	transcription factor TGA3-like isoform X1
Swissprot	Q39234	1e-126	TGA3_ARATH; Transcription factor TGA3
TrEMBL	A0A445L540	0.0	A0A445L540_GLYSO; Transcription factor TGA3 isoform A
STRING	GLYMA04G43411.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22070.1	1e-121	TGA1A-related gene 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Fang H, et al. The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]