PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN46583.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 514aa MW: 57051.4 Da PI: 8.169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN46583.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KHN46583.1 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	16.2	2.9e-05	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ KHN46583.1 161 WKCDKCSKRYAVQSDWKAHQKTC 183 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.47E-8	84	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	85	107	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.2E-5	85	107	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	86	126	156	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.5E-6	149	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.47E-8	156	182	No hit	No description
SMART	SM00355	89	161	181	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MSNISGDEGS FSTANTGEEV HQENKLQQPL NHPHGSSSGV RNSNSSTNQQ QQQANKKNRN 60 LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRGSNE 120 VKKRVYVCPE PSCIHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ 180 KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENSRVN HLLTSGMAPT TTLENELPDL 240 IATTMPLSAS SNNSTVSEFN NNYDTKSPLQ EHIVPMPFKS TSMGGGMFSN TTFSAGTLFG 300 GPKNMSHPSS STLQLSSNNS TAFNYFQDSK NASASSHMSA TALLQKATQM GATASNNNSI 360 INSPTMMQKS FISAMTGPDH NHISSYDHFH HPNPDDQSHN MAGISNAGAF TNLFFHKGQQ 420 EMSLIFDSNT SDMGMFGPIL MKNVEQEIGT GSSLVHDFLG VGDATSRVYE PQKQQQQRLE 480 LEALTHQRLQ IMNHFHHHLP HGDSATMEKS IWDI

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MSNISGDEGS FSTANTGEEV HQENKLQQPL NHPHGSSSGV RNSNSSTNQQ QQQANKKNRN  60
LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRGSNE  120
VKKRVYVCPE PSCIHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ  180
KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENSRVN HLLTSGMAPT TTLENELPDL  240
IATTMPLSAS SNNSTVSEFN NNYDTKSPLQ EHIVPMPFKS TSMGGGMFSN TTFSAGTLFG  300
GPKNMSHPSS STLQLSSNNS TAFNYFQDSK NASASSHMSA TALLQKATQM GATASNNNSI  360
INSPTMMQKS FISAMTGPDH NHISSYDHFH HPNPDDQSHN MAGISNAGAF TNLFFHKGQQ  420
EMSLIFDSNT SDMGMFGPIL MKNVEQEIGT GSSLVHDFLG VGDATSRVYE PQKQQQQRLE  480
LEALTHQRLQ IMNHFHHHLP HGDSATMEKS IWDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-35	157	222	3	68	Zinc finger protein JACKDAW
5b3h_F	4e-35	157	222	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN46583.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006575108.1	0.0	protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-111	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A0B2SP19	0.0	A0A0B2SP19_GLYSO; Zinc finger protein MAGPIE
STRING	GLYMA02G17293.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]