PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 241aa MW: 27010.5 Da PI: 7.8149 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 111.6 | 1.1e-34 | 36 | 235 | 1 | 219 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL +c++ + g++++a+ + +ls+laspdgd+mqR+a++f eALa ++a++ ++ k l+ +t + + e+ + klf++ P++k++h ++ KHN46508.1 36 LINLLNSCVKLTELGNFNAADVAFYHLSHLASPDGDSMQRVATCFIEALAYcQVAKNLRGVPKVLHLVKTLS--TPEQQLVKKLFFDFYPFIKIAHTIT 132 6799*********************************************96378889999999997777763..667777899**************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 Nq+I ea +g++ + ++L+ L + p++ iT++++ +ke le++g L A++l pf+fn+ v+++le+l++e+L +k KHN46508.1 133 NQTIIEACKGKQPL-------------MSLISCLKPSTPTCPKITITAIHE----KKEVLEKMGLHLGVEAQRLLFPFQFNP-VVSSLENLDPETLPIK 213 **********9765.............89999999888999**********....9**************************.799************* PP GRAS 198 pgEalaVnlvlqlhrlldesvs 219 +gE la+++vlqlh+ll+++ + KHN46508.1 214 KGEPLAISSVLQLHSLLASDDD 235 ****************987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.696 | 10 | 241 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.7E-32 | 36 | 235 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQGVSRQPKL WTQVHSTSRC VRVQGMNWDD DERIRLINLL NSCVKLTELG NFNAADVAFY 60 HLSHLASPDG DSMQRVATCF IEALAYCQVA KNLRGVPKVL HLVKTLSTPE QQLVKKLFFD 120 FYPFIKIAHT ITNQTIIEAC KGKQPLMSLI SCLKPSTPTC PKITITAIHE KKEVLEKMGL 180 HLGVEAQRLL FPFQFNPVVS SLENLDPETL PIKKGEPLAI SSVLQLHSLL ASDDDDEMAK 240 M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-13 | 30 | 220 | 13 | 217 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028195049.1 | 1e-113 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0B2SNU7 | 1e-179 | A0A0B2SNU7_GLYSO; Scarecrow-like protein 3 | ||||
STRING | GLYMA12G01470.2 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36001 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-49 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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