PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45906.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37435.4 Da    PI: 9.9657
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45906.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind407.31.9e-12413381301
   GAGA_bind   1 mdddgsre..rnkg..yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 
                 mdd g+re  r+k+  +y++a  + l +++   +q+m+++aerda+i+ernla+sekkaa+aerdmaf+qrd+a+aern+a++erdn++++l+++e+sl
  KHN45906.1   1 MDDAGHREngRHKAadQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFMQRDAAIAERNNAILERDNAIATLQYRETSL 99 
                 99****9999999889999555544444432145****************************************************************9 PP

   GAGA_bind  92 a....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
                 +     ++p+g+q+++g+k+i++ qq +++ p+++d ++ +re+++++alp        +e+ k++   rak+pke+k+ +++kk++k+ kkvkkes+d
  KHN45906.1 100 SsgsmPSCPPGCQISRGVKHIHHPQQqVHHiPNMGDASYSTREMHTTDALPAAP---IPSEAGKPR---RAKRPKEPKSASPNKKTSKPAKKVKKESED 192
                 9888889*****************9955669********************554...444555554...677999999999999999999*******99 PP

   GAGA_bind 185 er.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
                  +                             ska++k +dl+ln+v++D+st+P+PvCsCtG+lrqCYkWGnGGWqSaCCttt+S+yPLP+++++r+aR
  KHN45906.1 193 LNkvmfgkshewksgqemvnggddlnkqltvSKADWKGQDLGLNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHAR 291
                 5559*********************************************************************************************** PP

   GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 ++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
  KHN45906.1 292 VGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 338
                 **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.7E-1771338IPR010409GAGA-binding transcriptional activator
PfamPF062177.9E-1081338IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDAGHRENG RHKAADQYKS AQGQWLMQHQ PSMKQIMAIM AERDAAIQER NLAISEKKAA  60
YAERDMAFMQ RDAAIAERNN AILERDNAIA TLQYRETSLS SGSMPSCPPG CQISRGVKHI  120
HHPQQQVHHI PNMGDASYST REMHTTDALP AAPIPSEAGK PRRAKRPKEP KSASPNKKTS  180
KPAKKVKKES EDLNKVMFGK SHEWKSGQEM VNGGDDLNKQ LTVSKADWKG QDLGLNQVAY  240
DDSTMPAPVC SCTGVLRQCY KWGNGGWQSA CCTTTLSMYP LPAVPNKRHA RVGGRKMSGS  300
AFNKLLSRLA AEGHDLSNPV DLKDHWAKHG TNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937940.0BT093794.1 Soybean clone JCVI-FLGm-24M10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227497.10.0protein BASIC PENTACYSTEINE6
RefseqXP_028227498.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-161BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLI1JT520.0I1JT52_SOYBN; Uncharacterized protein
STRINGGLYMA04G02860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-141basic pentacysteine 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]