PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45700.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26165.3 Da    PI: 8.9613
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45700.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1957111357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  KHN45700.1  57 KKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 111
                 56779************************************************95 PP
2HD-ZIP_I/II116.91.2e-3756148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++L +ev +L++ l+e
   KHN45700.1  56 EKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLGEEVMKLKTMLRE 148
                  69**************************************************************************************88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007117.15152112IPR001356Homeobox domain
SMARTSM003898.7E-1955116IPR001356Homeobox domain
CDDcd000861.41E-1657113No hitNo description
PfamPF000461.1E-1657111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-2258120IPR009057Homeodomain-like
PRINTSPR000313.5E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000313.5E-592108IPR000047Helix-turn-helix motif
PfamPF021832.2E-7112146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEGNYGSTRR YVPRADSSLS FLYNYNYTPY PGMEVKQQTL AGTSSSMEKM NCGNQEKKKR  60
LTSDQLDSLE NSFQKEIKLD PDRKMKLSKE LGLQPRQIAV WFQNRRARWK NKQLEHLYDS  120
LKQEFDVISK EKQKLGEEVM KLKTMLREQA SRTQQQVSTG YTEISGDQET VESTSEALRC  180
SKRGTLHQQQ QNNNNIGEGN CSFTLEDHYN TVPVPYWPGV PYYHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980090.0BT098009.1 Soybean clone JCVI-FLGm-11N12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535265.11e-169putative homeobox-leucine zipper protein ATHB-51
RefseqXP_028182615.11e-169putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR03e-53ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0B2SL301e-168A0A0B2SL30_GLYSO; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLI1L9611e-168I1L961_SOYBN; Uncharacterized protein
STRINGGLYMA10G07440.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-54homeobox 51
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]