PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45698.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 477aa    MW: 54552.3 Da    PI: 6.3643
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45698.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.93.1e-24108204186
    trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +Wt+ +v++Li a+ +++++ +++           +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++d+++
  KHN45698.1 108 KWTDTMVRLLIMAVYYIGDEAGSEGtdkkkasglmQKKGKWKSVSRAMMEKGFYVSPQQCEDKFSDLNKRYKRVNDILGKGtACRVVENQNLLDSMD 204
                 7**************99988886433556788888**********************************************559********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-21106229No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEPIGLGCGM FSGLVGVESP LQQQQQEQNP HHLQHHPQMV PYATHHDTEN PHHPHLHHSI  60
KQGYPPFLSK TKQQQQQQQQ QSSFSDDDEP GSADDDPKKK VSPWQRMKWT DTMVRLLIMA  120
VYYIGDEAGS EGTDKKKASG LMQKKGKWKS VSRAMMEKGF YVSPQQCEDK FSDLNKRYKR  180
VNDILGKGTA CRVVENQNLL DSMDLSPKMK EEVKKLLNSR HLFFREMCAY HNSCGNGNNN  240
APQQGESGGE VSQPQSQSQA QPHHQQQQQR CFHSSEVANL GGSGVEGLRV LKVGNGEEGD  300
DDEDEDDDES EDDSDEDEDD LGEGGSRGHV GHGHEDIEDE NDGRTMRKRA RKVGGGVSNS  360
LSPQTMQQLS AEVTGMFQDV GKSAWDKKQW MRNRMKQLEE QRISYHTQAF ELEKQRLKWA  420
RFSSKKEREM ERAKLENERR KLENERMVLL IRQKELELMG LQPQQQQHQQ QQQHSST
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3503281e-175AF350328.1 Glycine max SHOOT2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028182411.10.0stress response protein NST1-like isoform X1
TrEMBLA0A0B2SLG70.0A0A0B2SLG7_GLYSO; Uncharacterized protein
STRINGGLYMA10G07460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-66sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]