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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KHN43929.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 307aa MW: 34099.5 Da PI: 7.4167 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 101.4 | 8.5e-32 | 139 | 195 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
KHN43929.1 139 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAIRRARGNGGRF 195
69****************************.**************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00521 | 1.0E-34 | 137 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 35.745 | 138 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 2.5E-27 | 140 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 1.4E-23 | 141 | 163 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE pattern | PS00686 | 0 | 143 | 163 | IPR018362 | CCAAT-binding factor, conserved site |
| PRINTS | PR00616 | 1.4E-23 | 172 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 307 aa Download sequence Send to blast |
MQSKSETANQ LRSDPHSFTP NNAYSEPWWR GIQYNPVPQA MLGVNASNSS SLERPNGDSE 60 SSEEDDDATK ESQPTAPNQS GNYGQDHQAM QHSSSSAPLV RDDCLTQAPQ VELVGHSIGY 120 TPFIGMPHAR MALPLEMAQE PVYVNAKQYQ GILRRRQARA KAELEKKLIK VRKPYLHESR 180 HQHAIRRARG NGGRFAKKTE VEASNHMNKE KDMGTGQVPL SRSISSSGFG SLPSDSAETW 240 NSPSVQQDAR GSQVHERFEE RNYANVLQSS STFCLHSGER VEEGDCSGQQ RGSILSEHTS 300 QRRLAIQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4awl_A | 1e-18 | 139 | 207 | 2 | 69 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KHN43929.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT095457 | 0.0 | BT095457.1 Soybean clone JCVI-FLGm-25M11 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001276187.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
| Refseq | XP_006575723.1 | 0.0 | nuclear transcription factor Y subunit A-2 isoform X1 | ||||
| Refseq | XP_006575724.1 | 0.0 | nuclear transcription factor Y subunit A-2 isoform X1 | ||||
| Refseq | XP_006575726.1 | 0.0 | nuclear transcription factor Y subunit A-2 isoform X1 | ||||
| Refseq | XP_028222154.1 | 0.0 | nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
| Refseq | XP_028222164.1 | 0.0 | nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
| Refseq | XP_028222173.1 | 0.0 | nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
| Refseq | XP_028222181.1 | 0.0 | nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
| TrEMBL | A0A0B2SI46 | 0.0 | A0A0B2SI46_GLYSO; Nuclear transcription factor Y subunit A-9 | ||||
| TrEMBL | C6TD07 | 0.0 | C6TD07_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA02G47380.5 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4012 | 34 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G20910.1 | 1e-56 | nuclear factor Y, subunit A9 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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