PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 26681.5 Da PI: 7.8012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.8e-11 | 20 | 54 | 4 | 39 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W ++Ed +l++ v+++G+ +W++Ia+++ gRt+k+ KHN43793.1 20 WKKDEDVKLLQQVREHGPQNWRSIASHLE-GRTGKS 54 *****************************.***985 PP | |||||||
2 | Myb_DNA-binding | 27 | 1.1e-08 | 87 | 113 | 19 | 47 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 +G + W++I++ ++ gRt++ +k++w+ KHN43793.1 87 YGAR-WALISKLFN-GRTDNAVKNHWHVM 113 7999.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.834 | 12 | 64 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 14 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-5 | 16 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-10 | 19 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.43E-16 | 19 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.10E-9 | 20 | 63 | No hit | No description |
SMART | SM00717 | 14 | 78 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-8 | 87 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 87 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.285 | 87 | 114 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MANSSAAAED ITNRLRVNYW KKDEDVKLLQ QVREHGPQNW RSIASHLEGR TGKSELDVVI 60 NKFGYVMGRS NSNVILIFTG SITKLVYGAR WALISKLFNG RTDNAVKNHW HVMRARKRRE 120 SKQKNWPGVF QDSYASSSSN TVLHPNGPNP HDMVCPSNGS SSSAKFGTIP SFADSTPVNG 180 SDHFGLFNGA DDAMLQRSLF DNSFAEFGSS SSSVQVQADE ESNGSGQKEV PFFDFLGVGD 240 DQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-15 | 20 | 117 | 30 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43793.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006596265.1 | 1e-144 | transcription factor MYB54 | ||||
Refseq | XP_028198715.1 | 1e-144 | transcription factor MYB54-like | ||||
TrEMBL | A0A0B2SG64 | 1e-179 | A0A0B2SG64_GLYSO; Transforming protein Myb | ||||
STRING | GLYMA14G27235.1 | 1e-143 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20205 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 7e-26 | myb domain protein 56 |
Publications ? help Back to Top | |||
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