PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43530.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 567aa MW: 61769.8 Da PI: 7.4995

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43530.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KHN43530.1 117 FVCEICNKGFQRDQNLQLHRRGH 139 89*******************88 PP
2	zf-C2H2	16	3.3e-05	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ KHN43530.1 193 WKCDKCSKRYAVQSDWKAHQKTC 215 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.54E-8	116	139	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	116	139	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	117	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	117	139	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	158	188	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.6E-6	181	214	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.54E-8	188	214	No hit	No description
SMART	SM00355	89	193	213	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MSNISGDEGS FSSGNNGEEV HQESQQQHLQ SQLHDSSSGP SGACNSNASS NQQQTKKKRN 60 LPGTPGKYSA ASTSIFVSIP LSVACLNIEF CSLVELEDPN AEVVALSPTT LMATNRFVCE 120 ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS TEVKKRVYVC PEPSCVHHNP ARALGDLTGI 180 KKHYSRKHGE KKWKCDKCSK RYAVQSDWKA HQKTCGTREY KCDCGTIFSR RDSFITHRAF 240 CDALTEENNR VNNQGLTSGM PPNLQSQIPD LMSTMPLTTS PNTASKFGEY DPKNPLKSLA 300 QELVPIPFKF MSMGGGMFST NAGALFGGPK TMSPSSSSLQ LGSSTSSSFN YLQDSENGGL 360 IAASAQMSAT ALLQKAAQMG ATASNSINSP MMQKGFVSGT TTGPDHVSST TRPPYSGAML 420 QHNNSYDHFS PQPDLSSMAE VSGGGAFINQ LFHKGQEISQ VFDTNNPGSA MNDVGMFGQM 480 PMGRDHHNQG LMKSVEQEVS NSSSLMHGRD VNDGNHPMQP STRFGGSDMT TVHDFLGIGG 540 STSRVMNHFH HHFPHEDSTI EEPMWDV

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MSNISGDEGS FSSGNNGEEV HQESQQQHLQ SQLHDSSSGP SGACNSNASS NQQQTKKKRN  60
LPGTPGKYSA ASTSIFVSIP LSVACLNIEF CSLVELEDPN AEVVALSPTT LMATNRFVCE  120
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS TEVKKRVYVC PEPSCVHHNP ARALGDLTGI  180
KKHYSRKHGE KKWKCDKCSK RYAVQSDWKA HQKTCGTREY KCDCGTIFSR RDSFITHRAF  240
CDALTEENNR VNNQGLTSGM PPNLQSQIPD LMSTMPLTTS PNTASKFGEY DPKNPLKSLA  300
QELVPIPFKF MSMGGGMFST NAGALFGGPK TMSPSSSSLQ LGSSTSSSFN YLQDSENGGL  360
IAASAQMSAT ALLQKAAQMG ATASNSINSP MMQKGFVSGT TTGPDHVSST TRPPYSGAML  420
QHNNSYDHFS PQPDLSSMAE VSGGGAFINQ LFHKGQEISQ VFDTNNPGSA MNDVGMFGQM  480
PMGRDHHNQG LMKSVEQEVS NSSSLMHGRD VNDGNHPMQP STRFGGSDMT TVHDFLGIGG  540
STSRVMNHFH HHFPHEDSTI EEPMWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	189	253	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-34	189	253	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235349	0.0	AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014626990.1	0.0	protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-106	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A445FJL2	0.0	A0A445FJL2_GLYSO; Protein indeterminate-domain 2
TrEMBL	K7MZH6	0.0	K7MZH6_SOYBN; Uncharacterized protein
STRING	GLYMA19G39640.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]