PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21923.8 Da PI: 10.7318 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.8e-05 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F ++ L H++ H KHN43478.1 42 FRCHYCKRVFGNSQALGGHQNAH 64 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.41E-6 | 39 | 69 | No hit | No description |
Pfam | PF13912 | 2.7E-5 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.281 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSNHHHVVQT SPPKLFGFPL TEQEELNSDA ERKYEVGEDR KFRCHYCKRV FGNSQALGGH 60 QNAHKKERQR ARRFQIHTHR RSIAAPSSAS VLNSHAIIRS VPSVTVTTLP SSIYLRGGPP 120 TTSSLLPIFH PRQPNNTKHF PSRPILIPSS TYHRTNCTPS FPFQLYASPS VLQSAPNVRD 180 FSAESREVDV HLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43478.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093208 | 9e-61 | BT093208.1 Soybean clone JCVI-FLGm-17A17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554539.1 | 1e-141 | protein LATE FLOWERING | ||||
Refseq | XP_028217624.1 | 1e-141 | protein LATE FLOWERING-like | ||||
TrEMBL | A0A445FJV3 | 1e-140 | A0A445FJV3_GLYSO; Zinc finger protein GIS2 | ||||
TrEMBL | I1NBA6 | 1e-140 | I1NBA6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G40220.1 | 1e-141 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 3e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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