PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43374.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 300aa    MW: 34648.5 Da    PI: 6.5395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43374.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065161185123
                 EEETTTTEEESSHHHHHHHHHH..T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                 + C  C+k ++  ++++ H+++  H
  KHN43374.1 161 FYCDLCNKQYKLAMEFEAHLSSydH 185
                 78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004437.1E-1964109IPR000467G-patch domain
PROSITE profilePS5017416.78566111IPR000467G-patch domain
PfamPF015852.9E-1667107IPR000467G-patch domain
PfamPF121711.6E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEYRWTNGRQ ETGGRDRRQS KREQAYQDSL IEDLSEDFSL PINHRPTENV DLDNVEQASL  60
DTQITSSNIG FKLLQKMGWK GKGLGKDEQG IIEPIKSGIR DPRLGVGKQE EDDFFTAEEN  120
IQRKKLDVEL EETEEHVKKR EVLAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKQMKEMHGG SSRDDRQKRE QLRQEREMAN ADAQKQQQLQ LQQESGSATV  240
PSESKTATAL TDQEQRNTLK FGFSSKGSAS KITFGAKKQN VAKKQNVPIS SIFSNDSDEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963740.0BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028218533.10.0G patch domain-containing protein 8-like
TrEMBLA0A445FK990.0A0A445FK99_GLYSO; G patch domain-containing protein 8
STRINGGLYMA19G41310.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]